KEGG   Scomber japonicus (chub mackerel): 128368511
Entry
128368511         CDS       T09718                                 
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
  KO
K17302  coatomer subunit beta'
Organism
sjo  Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sjo04131]
    128368511 (copb2)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128368511 (copb2)
Membrane trafficking [BR:sjo04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    128368511 (copb2)
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   128368511 (copb2)
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_HPS5 PEP5_VPS11_N Beta-prop_SCAP Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N HEAT_GCN1 GEMIN8
Other DBs
NCBI-GeneID: 128368511
NCBI-ProteinID: XP_053185321
LinkDB
Position
12:14236345..14244913
AA seq 946 aa
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEIQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAEGINGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMAEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKV
NQKAAESLADPTEYENLFPGLKEAFAAEHYLRESCLGTTRPAKDYPLVTLNEDRNILEEA
QGYEPKGTFLPPVTKTQDSEEFTSVAAAPEAPTAAFMPSQSEPAAPTPLGKEEEEEVEEE
EEVEEEEETESQKDKCLDELEVDLDNMELDDIDTTDVNLDDDFLDD
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgcctctgaggctggacattaagcggaggctgacagccagatctgaccgagtcaagagt
gtggaccttcatcccactgaaccatggatgctggccagtctgtacaacggcagtgtctgt
gtgtggaaccacgaaacacagaccctagtgaagacttttgaggtgtgtgatcttcctgtc
agagcctctaaatttgtggccaggaagaactgggtcatcacaggagcggatgatatgcag
atccgtgtgttcaactacaacaccttggagcgggtccacatgtttgaggcccactctgat
tacatccgctgcatcgctgttcacccaacccagccatacatcctcaccagcagtgatgac
atgttgatcaagctatgggactgggacaagaagtggtcgtgcagtcaggtgtttgagggt
cacactcactatgtcatgcagattgtcatcaacccgaaggacaataatcagtttgccagc
gcctccctggacagaacaatcaaggtttggcagcttggctcttcgtctcccaatttcact
ttggagggtcacgagaaaggagtcaattgtatcgactactacagtggaggagacaagccc
taccttatatcaggggctgatgaccgccaagttaaaatctgggactatcagaacaagacc
tgtgttcagactctggaaggccacgctcaaaacgtctcctgtgtcagcttccaccccgag
cttcctatcattatcactggatccgaggatggtactgtgcgtatttggcactctagcact
taccgcctggaaagcacactgaactatggcatggagagagtgtggtgtgtatgcggtctc
aggggctccaacaatgtggcattgggctatgatgaaggcagcatcatcatcaaagtgggt
cgtgaggagccggccatgtctatggacaccaacggcaaaatcatttgggccaaacacagc
gaaattcagcaggccaacttaaaggcaatgggtgatgccgagatcaaggacggagagaga
ctcccgctggctgtaaaagacatgggaagctgtgagatttacccccaaaccatccagcac
aacccgaacggaaggtttgttgtggtgtgtggagatggagagtatatcatctacactgca
atggctctgaggaataagagctttggctcagcacaggagtttgtttgggcacatgactct
tctgaatatgccatcagagaaagcaacagtattgtcaaaatcttcaagaatttcaaagaa
aagaaatcttttaagcctgactttggagccgaagggattaatggaggtttcttgctcggg
gtgaggtcagtgaatggcttggcattttatgactgggagaacacagaactgatccgccgc
attgagatccagcccaaacacatcttctggtcagactctggtgagctggtctgtatcgct
acagaggagtccttcttcattctgcgttacatggcagaaaaagtagccgcctcccaagag
aacaatgaaggagtgacagaggatggtattgaggatgcctttgaggtccaaggagagatc
caggagattgtgaagactggactctgggttggagactgcttcatctacaccagctctgtc
aacagactcaactactatgtaggaggagagattgtcactattgctcacctggacagaaca
atgtatctgctgggttacatacccaaagatgaccgtctgtacctgggagacaaggagctc
aatattgtcagctactccctgctggtctctgtcttggagtaccagactgctgtaatgaga
agggactttggaatggccgacaaggtgcttcccacaattccaaaagagcagcggaccaga
gtggcccatttcctggagaaacagggtttcaagcagcaggcacttgctgtgtccacagac
cctgaacacaggtttgagctggcgttgcagctgggagaattgaagatcgcctaccagctg
gctgtggaggcagagtcggagcagaagtggaagcagttagcagagctagctatcagtaag
tgccaatttgggttggcccaggagtgcttgcaccacgcgcaggattacggcggcctgctt
ctccttgccacagcctctggcaacgccaccatggtgggcaagctggctgagggggcagag
agagatggaaagaacaatgtggccttcatgacctacttcctgcaggggaaactggaccaa
tgtctggagctgctgatcagaactaacagactacctgaagctgctttcctggctcgcacc
tacctgcccagtcaggtatcccgtgtggtcaaactgtggagggaaaacctggccaaagtc
aatcagaaggcggctgagtccttagcagaccctacagagtatgaaaatctgttccctggg
ctgaaggaagcctttgcagctgagcattacctcagagagagctgcttgggcaccaccagg
ccagccaaagattatcctctggtcacgctcaatgaagacaggaatattcttgaggaggct
cagggatatgagcccaaaggaactttccttcctcctgtcaccaagacacaggatagtgag
gagttcacctcagtggcagcagctcctgaagctccaacagcagccttcatgccttcacag
tctgaacctgcagctcctactccactggggaaagaggaggaggaggaagtagaggaagag
gaggaggtagaggaagaggaggagacggagtcacaaaaagataagtgtttggacgagctg
gaagtggacctggacaacatggagctagatgacatcgacaccacagacgttaacctcgat
gacgactttctagatgattga

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