Scomber japonicus (chub mackerel): 128368577
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Entry
128368577 CDS
T09718
Symbol
rims1b
Name
(RefSeq) regulating synaptic membrane exocytosis protein 1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128368577 (rims1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128368577 (rims1b)
Membrane trafficking [BR:
sjo04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
128368577 (rims1b)
Small GTPases and associated proteins
Rab associated proteins
128368577 (rims1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
FYVE_2
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
128368577
NCBI-ProteinID:
XP_053185404
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All DBs
Position
2:35171554..35240980
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AA seq
1594 aa
AA seq
DB search
MSASVGPQGGPRPPTAPPSMPDLPDLSHLTEEERKIIMGVMARQKEEEEKEQAMLKTLHQ
QFESYKQEVRRIGAETRRQQTQQKDDAPTCGICRKTKFADGCGHLCSYCQTKFCARCGGR
VSLRSNNEDKVCLIVKDRVMWVCNLCRKQQEILTKSGEWFSGSGVRPGSLGTSLTDPATG
GEAQRDRKLLRSRSQAPPSTNSNTGLPDGTQPPPGVTAAKGADTMPGSRSQSEPPREKKR
PVSLHEQNGKGGMGRGSGRRPAGKLPSQSSLDERVGPADRGERRLGDGRRLEKIHSQDYE
DGEENLGRLETHRRRPDDEEQRERQRREEEFQNRYRSDPNLARYPVKPQKEEQEMRMHAK
VSKVRHERRHSDLAINEVGLGPGEGGGAGEVPENRLARRGGGGEGDHKAVMENHQAYSVD
RTVGVGGGPPPVGGVRSGPQPGGPVPPDWGPNKGHLEPGTTRTPRDKGGDNLLRKDSQSS
DQSESLRPPPPRSYKSKRGVNRRQMSISSSEEEGGSTPEYTSCEDCVSEKGDWDCHPLDP
TVWHHPVTWQPSKEGDHLIGRITLSKRSAMPREAGSLLGLKVVGGKMTETGRLAAFITKV
KKGSLADVVGHLRAGDEVLQWNGKSLPGATKKEVYNIILESKAEPQVEIVVSRPIGDIPR
IPESSHPPLESTGSSSFESQKMDRPSISVMSPTSPGTLRDLPLVLPGQLSVKLWYDKVGH
QLIVNVLQAIDLPPRPDERPRNPYVKMYFLPDRSDKSKRRTKTVKKSAEPKWNQTFLYSH
VHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELETALLDDIPHWYKLQTHDVSSIPL
PQPSPYLPRRHVHGDSPSKKLQRSHRIIDTEFDDGLIVTKDAERNSRERERGSTLAVPEQ
QRTVQHRSRSVSPHREDSCRARSRPAHVPMQRSLDEIHQNRHHSHSPSRYHDSHLEHQRS
GDSDYEYSEDSEVLEMHRSIRGGSAECLHTNSDLQPSLDRVRSASTTCLRPDTNFHSPDR
DRCSNSLPRKTPPRPRILVEHVAPEEDRQCSNSSSPNCLRGSKKSLEGDSRIQPTSILRG
SRGRGGPLRPFGQTALAGSCTNSPRPDRAHHHGSPSSPTGTPSSGRRGRQLPQLPAKSSS
IEIALAVEERARQLQMKVHSYRPSASHDPETDLKTKREMYAEQRRSSDNMSARSSDSDMS
DVSALSRASSASRLSSTSYMSIQSERPGGRLRSKSLEEEKKDRRISWGVNGEEGRRRSAG
KRRFSEELKRRRHTVAGDTRESSRQMRASAGRSMLKSSSVSGEIYTQERTDGSQSDTALG
TVGGGSKKRRSSLSARVVAIVGNRRSRSTSQISGPEGKSKKEKGAPIQRSTETGMAVELT
RNMSRQPSRESNNGSMNSYNSEGNLIFSGVNLGASSQFSDFLDGLGPAQLVGRQTLATPA
IGDIQIGMMEKKGQLEVEVIRARGLVQKPGSKSLPAPYVKVYLLNNGAYVAKKKTKIARK
TLDPLYQQALLFEESPQGKVLQVIVWGDYGRMDHKSFMGVAQILLEELDLSSTVIGWYKL
FPPSSLVDPTLASLTRRASQSSLDSSSGPPGVRS
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcggtggggccccaaggcggccctcgcccacccaccgcgccgccatccatg
ccggatctgccggacctcagccacctcacagaggaggagaggaagatcattatgggagtg
atggctcggcaaaaggaggaagaggagaaagaacaagccatgctaaaaacactgcaccag
cagtttgagagctacaaacaggaggtgcgtcgcatcggagcggagacacggcgtcaacag
acccaacagaaggatgacgcacccacctgcggtatctgccgcaagaccaagtttgcagac
ggctgcggccacctttgctcctactgccagaccaaattctgcgctcgctgcgggggccgg
gtctccctgcgctccaacaatgaggacaaagtgtgtctcatagtgaaggacagggtaatg
tgggtatgcaacctgtgccgtaagcagcaggagattctcaccaaatcaggagaatggttt
tcggggtcaggggtgcggcctgggagccttggcacctctttgaccgacccagccacggga
ggtgaggcccaacgggacaggaagctacttcgctccaggtcccaagccccaccctccacc
aattccaacacaggcctgccagacgggacacagcctccccctggtgtcactgctgccaag
ggtgctgacaccatgcctggctcccgctcccaaagtgaaccacccagagaaaagaaaagg
ccagtttccctccatgaacaaaatggtaagggaggcatggggcgcggtagtgggcggagg
cctgctgggaagttgccttctcagtcatccctggatgagcgggtaggccccgccgaccga
ggtgagagacggttaggagatggccggagactggagaagatccattctcaggactatgag
gatggggaggagaatttgggtcgtttagaaacacatcgcagacgcccagatgatgaggaa
cagagagagcgccagcgccgtgaggaggagttccagaatcgttaccgtagtgaccccaat
cttgcccgatacccagttaaaccacagaaggaggagcaggagatgcgcatgcatgctaaa
gtttccaaggtccgtcatgaacgacgacacagtgatctagcgatcaatgaggttggacta
gggcctggcgaaggaggaggtgcaggggaggtgcctgaaaaccgactggccaggagaggt
ggaggtggggagggagaccacaaggccgtcatggagaaccaccaagcttactctgtggat
aggaccgtgggggttggagggggacctccccctgtaggtggtgtgagatcagggccccaa
cctgggggaccagtgcctccagattggggcccgaacaagggccacctagagcccggtaca
acacggacaccaagggacaaaggtggggataacctgctgaggaaggactctcagagctca
gaccagtcggaatctttgcggccaccccctccacggtcatacaagagcaaacgcggagtc
aacaggaggcagatgtccatcagcagctcagaggaggagggcggctccacgcccgagtac
accagctgtgaggattgcgtcagcgagaaaggtgactgggattgtcatccactagatcct
acagtgtggcatcatccagttacatggcagccatccaaagagggtgatcacctgattggg
cgcatcactctaagcaagaggtctgccatgccccgagaagctggctccctcctcggccta
aaagtggttggagggaagatgacagagacagggagacttgcggccttcatcaccaaagta
aagaaaggcagcctagcagatgtcgtgggacacctacgagcaggtgacgaggttttacag
tggaatgggaagtcgttgccaggagcaaccaagaaagaagtgtacaacattatccttgaa
tccaaggctgagcctcaagtggagattgttgtttcaagacctatcggagacatcccgaga
atcccagagtcatcccaccctcctctagaatctacaggctccagttcctttgagtcacag
aaaatggaccgtccctctatatcagtaatgtcccctactagccccgggaccctcagagac
cttcctctggtattgcctggacagctctctgtgaaactgtggtacgacaaagtgggccat
cagttgatcgtcaacgtccttcaagccatagacctgccaccccgaccagacgaacgacct
cggaacccctatgtcaagatgtacttcctgcctgatagaagtgataagagtaaacgacgg
actaaaacagtgaagaagagtgccgagcccaagtggaaccagaccttcttatactcccac
gttcacagacgggacttccgagaacgcatgctagagatcactgtctgggaccagcctagg
gtccaagaggaggagagcgaatttctgggcgagatcctgatagagttggagaccgccttg
ctggacgacattcctcattggtataaactccagacgcatgacgtgtcctctatacctctg
ccacagccttctccgtacctcccacgcagacatgtccatggagacagccccagcaagaaa
ctacagaggtctcatcgcatcattgatacagagtttgatgatggtttgatagtaactaaa
gatgcagagcgtaactccagggagagagagcgaggcagtacgctggctgtgcccgagcag
cagcgaaccgtccagcaccgctcccgctcagtgtctcctcacagagaggactcctgcagg
gcaaggtcacgacccgcacacgtgcccatgcaaaggagtctggatgagatccaccagaac
cgtcaccactcccactccccctcccgctaccacgactcacacttggagcatcagcgctct
ggtgactcggactacgagtactctgaggacagtgaggtcctggagatgcacaggtctatc
cggggcgggagtgccgagtgcctgcacacaaacagcgacctgcagccatcgttggacaga
gtgaggagtgccagcaccacttgtctgagaccagacaccaactttcactctcctgacaga
gacaggtgctccaactctttgccccgcaagactcccccaagaccaaggatcttagtagaa
catgtggcccctgaggaagacaggcagtgtagcaattcatcaagtccaaactgtctaagg
ggcagcaaaaaaagcctggagggtgacagtcgcatccagcccacctctatcctgaggggc
agtagggggagagggggcccactgaggccctttggccagactgccctggcagggtcctgt
actaactctccacggccagacagagcacaccatcatggcagcccctcctctcccactggg
actccatcatcaggtcgcaggggcaggcagctgccacagctccctgctaagagcagcagc
atagagatagcccttgcggtggaggagcgagcccgacagctgcagatgaaagtacattcc
taccggccttcagcctcccacgaccccgagacggacctcaagaccaaacgggagatgtac
gcagaacagaggcgcagcagtgacaacatgtcggccagatcgtcagacagtgatatgagt
gatgtgtcagctctctcccgtgccagcagtgcctcccgcctcagtagcaccagctacatg
tctatccaatcagaacgacccgggggacgactcaggtccaagtcattagaggaggagaag
aaggacaggaggatttcgtggggggtgaatggagaggaggggaggaggaggtcggcggga
aagagacgtttctctgaggagttgaagcgcaggagacacactgtagctggagacacaagg
gagtccagtcggcagatgcgagcgtcagcgggccgcagcatgctaaagagctccagcgtg
agcggggagatctacacccaagagcgaacagacggcagccaatcggacacagcgctgggc
acggtgggcggcggcagcaaaaagagacgctccagcctcagtgccagggtggtggccatt
gtgggtaaccgccgcagccgcagcacttcacagatcagcggccctgaggggaagagtaag
aaggagaagggtgcgcccatccagaggagcacagagaccggcatggcagtggagctgacc
aggaacatgagtcgccagcctagcagagagtccaacaatggcagcatgaacagctacaac
tctgagggaaatttgatcttctctggagtcaatctgggtgccagcagtcagttcagtgac
ttcctggatggtctaggaccggctcagttagtaggcaggcagacactggctacacctgcc
ataggtgacatccagattgggatgatggagaaaaagggtcagctggaggttgaagttatc
agagcgcgtggacttgtccaaaagccaggatccaaatctctccctgctccatatgtcaag
gtctatctgctgaataatggagcgtacgtagccaaaaagaaaaccaagattgcacggaaa
acacttgacccactgtaccagcaagcactgctattcgaggaaagcccacagggtaaagtc
ttacaggtgattgtatggggagactacggccgcatggaccataaaagcttcatgggagtt
gcacaaatcctattggaggaactggacttatcaagcacagtaatcggttggtacaagttg
ttcccaccttcctccttggtggatccgacgctcgcctccctaacacggcgagcttcccag
tcatcgctggacagctcctctggaccaccaggggtccgatcctag
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