Scomber japonicus (chub mackerel): 128368619
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Entry
128368619 CDS
T09718
Symbol
ubtfl
Name
(RefSeq) upstream binding transcription factor, like
KO
K09273
upstream-binding transcription factor
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128368619 (ubtfl)
03021 Transcription machinery [BR:
sjo03021
]
128368619 (ubtfl)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
128368619 (ubtfl)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
128368619 (ubtfl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_5
HMG_box
HMG_box_2
DUF4473
NOA36
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128368619
NCBI-ProteinID:
XP_053185447
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All DBs
Position
12:35667467..35691313
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AA seq
704 aa
AA seq
DB search
MMNGSSSVSVSHNARIKREPDDWSKEDCLTLLERIRGILPDTDGMKYKTTESHFDWEKVC
FGSFSGEMCRLKWQKVSTEVRKYRTMTELIVDAIEFVKNPYKGKKLKTHPDFPKKPLTPY
FRFFMEKRAKYAKIHPEMSNLDLTKILSKKYKELPEKKKQKYITEFQREKEEFEKNMARF
KEDHPELIEERKKSDLPEKPKTPQQLWYNHEKKTYMKLHPDVSQKELKEALRRQWSQLSD
KRRLKWISKALELQKDYEDSMRVYHEAHPDVNSDEHVRSVLTKAERQLKDKFDGRPTKPP
PNGYSLYCAELMVNMKDVPSTERMVLCSKQWKMMTQKEKDMFQKRCEQKKKQYDIDLQRF
LESLPDEERDRVMTEEKLGGKMAASPHRAKSPSVKDRGREAEPETWVSAGAPKERQGGKK
TVKLPETPKTAEEMWQHSVIGDYLAKYRSDRRKAQQAMEAAWKSMEKKEKIPWIKKAAED
QKRYERELVEMRAPPTAQGQRKPKFDGEPKKPPVSGYQMFSQELLTNGELNHFSLKERMV
EIGKRWHKLTQNQKDKYKKLVEEQQVEYKAELEAWIKSLSPQERAVYKEFSTTKRRSTAK
ARSSPGAKVRVTAKTKAGSSRAATPGVTVSKRAMAYRAKQDMSDSDEEEEKSESSDSDED
DETSGSSDSDDEDEDENDDEDDEDEDEDDEDQSSSEDSSDSDSD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacggcagcagcagcgtctcagtgtctcacaatgccagaatcaaacgagagcca
gatgactggagtaaggaggactgtctgactctgctggagaggattcggggtatcctgccc
gatacagacgggatgaagtataaaaccacggagtctcatttcgactgggagaaggtttgc
ttcggcagcttcagcggagagatgtgtcggctgaagtggcagaaagtttcaacagaggtt
cgtaaatacagaacgatgacggagctcatcgtggacgccatcgagtttgtgaagaacccg
tataaaggcaagaagctgaagactcatccagacttccctaagaagcctctgaccccgtac
ttccgcttcttcatggagaaacgagccaaatacgccaaaatccacccggagatgagcaac
ctggacctcaccaagatcctgtccaagaagtacaaagagctgcccgagaagaagaagcaa
aaatacatcacagagttccagagagagaaagaagagttcgagaagaacatggctcgcttc
aaggaggaccatccagagctcatcgaggagagaaagaagtctgacctgccggagaaacca
aaaactccccaacagctgtggtacaaccacgagaagaagacctacatgaagctgcaccca
gatgtgagtcagaaggagctgaaggaggctctgaggagacagtggtcccaactctccgat
aagaggagactgaagtggatcagcaaagccctggagctgcagaaggactacgaggacagc
atgagagtgtatcatgaagctcatccagatgtgaactcagacgaacacgtgcgctccgtc
ctcacgaaggcagaacgacaactcaaagacaagttcgacggacggccgacgaaaccgccg
cctaacggctactctctgtactgcgcggagctgatggtgaacatgaaggacgtcccgagc
accgagcggatggtgctctgcagtaaacaatggaaaatgatgactcagaaagagaaggac
atgtttcagaaacgctgtgagcagaaaaagaagcagtacgacatcgacctgcagaggttc
ctggagagtctgccagacgaggagcgagaccgcgtcatgacggaggagaaactgggcggc
aaaatggccgccagtccacacagagccaagtctccttctgtgaaggatcgcggtcgggag
gcggagccggagacgtgggtttctgccggagcgccaaaagagagacaaggcgggaagaag
acagtgaaacttccagagacgccaaaaacagcagaagagatgtggcagcacagcgtgatc
ggagactacctggctaaatacagaagcgaccgcaggaaggctcagcaggcgatggaagca
gcctggaagtcgatggagaagaaagagaaaattccctggatcaaaaaagcagccgaggac
cagaaacgctacgagagggaactggtggagatgagagcacctcctacagctcagggtcag
aggaagccgaagtttgacggagaaccaaagaagcctcccgtgagcgggtatcagatgttc
tcccaggagctgctgaccaatggggagctgaaccacttcagcctgaaggagcgcatggtg
gagatcggcaagcgttggcacaaactgacccagaaccagaaggacaagtacaagaagctg
gtggaggagcagcaggtggagtacaaggccgagctggaggcctggatcaagtctctctct
cctcaggaacgagccgtctataaggagttttccaccacgaagcggcgcagcactgcgaag
gctcgcagcagtccaggagcaaaagttcgagtgacggcgaagaccaaggcaggaagctca
agagccgcgacgcctggagtcaccgtgagcaagagagcgatggcatacagagccaagcag
gacatgtccgactccgatgaggaagaggagaagagcgagtcgtcggactctgatgaagat
gacgagacgtcaggaagcagcgacagcgatgacgaagacgaagacgagaatgacgatgag
gacgatgaagacgaagacgaggacgatgaagatcagtcgtcctcagaggactccagtgac
tcggactcggactag
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integrated database retrieval system
