Scomber japonicus (chub mackerel): 128368629
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Entry
128368629 CDS
T09718
Symbol
smg7
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128368629 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368629 (smg7)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128368629 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
128368629 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
128368629
NCBI-ProteinID:
XP_053185457
LinkDB
All DBs
Position
12:34827343..34864773
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AA seq
1157 aa
AA seq
DB search
MNICAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKLGGGGGGGGAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRH
AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR
DEVKTKWSVSDFIKAFIKFHGHVYLSKSVEKLDVLREKLEEQFQRLILQKAFSSQQLVHI
TVINLFELHHLRDLTTDAGEQSYSSEQQISWFQLLGLFMSFLGVMCSRALFNRKRGEEIM
GECPLPAIKVSLDWLKLRPSVFHEAAVDKRQYIWPWLVSILNSFQPKEDDVSCSSVTPLP
EEFELQGFLALRPALRSLDFTKGHQGILVDRDGLPVHSRHQRLISLGKWVADNQPGLIQC
HVSEEGLLIFITDIPEQAIEEPQEKEAPVLQESSNGEQTPNDGGNGGLKSVLSAGKTQSS
WPDGGDRPVVTFKENIKPREQSRDATRSHHQKDAAKERRDFAKGNGAAGKGELKRDGKRK
SEMKKSGHEKATDAGKQVKAQVELRKTPVSEAKKTPATQTQTTCSSQFIPIHHPGAFPPL
PSRPGFPPSAYVIPPPVAFPGLQVNPGFTFSTGVSVPGPFLQPAVHTQAGAQAGKQSHIP
YSQQRPSGPGPGQGPGPGSSGPLPQGPSQGGQTQAQSPSQQALQQLQVMSQQQQSPTKPG
QMGKSPPHHPGLQQYMQVQDQQTQLWSQAALQKLPSLQLSLKQQQQQQSFYMAPQDPLKL
YEHQLQGPAVPPPPHAVPPPPHAQPPPPHAQPPPALASMEKKLKYPDVKVQDFYWEPSYR
MGEGLAVMDRMKRPGGAMCSEQDAAAGPRGPPFELPNQARMEGVPEVVSQSSSLLPMSGF
PMQEYNQNSIFSQAYGKNLPPSSKPDAPMMHQEPSLYSLFEGTPWSPSLPASSDHSTPAS
QSPHSSNPSSLPSSPPTHNHGAMPFSNFGPIGTPDSRDRRMVDRWKAEKPGGVSGFGLDY
LPAASAASDWHQAGPTGSSWTNQESPMEESSSTVLLDSLKSIWSSSMMQPGPSALEQLLL
QQKQKQQRGHGAMNPPH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaatatctgcgctcagtatctccgacaggcagaggccctgaaggctgacatgacagat
tcaaagctcggggcagcagaggtgtggacgtctcgacaggctctgcaggatctctaccag
aagatgctggtcacagacctggagtacgctctggacaagaaggtggagcaagacctgtgg
aaccatgcgtttaagaaccagatcaccacgctgcagagtcaggccaagaacagagccaac
cccaaccgcagcgaggtgcaggccaacctgtcgctgttcctggaggctgccagcggcttc
tacacacagctgttgcaggagctgtgcaccgtgttcaacgtggacctgccgtgtcgcgtc
aagtcatctcagctcggcatcatcagcaataaactgggaggaggaggagggggaggaggc
gccatcgtcacaccacagcccagctcctgctcctacatctgccagcactgcctcgtccac
ctcggagacatcgctcgttaccgaaaccagacgagtcaggccgagtcgtactacagacac
gctgctcagctggtcccctctaacggtcagccgtataaccagctggcgatcctggcctcc
tctaaaggagatcacctcaccaccatcttctactactgccgcagcatcgctgtcaagttc
cccttccctgctgcctccaccaacctgcagaaagccctgtccaaggctctggagagccgt
gacgaggtgaagaccaagtggagcgtgtcagacttcattaaggccttcataaagttccac
ggtcatgtgtacctgagtaagagtgtggagaagctggacgttctgagggagaagctggag
gagcagttccagaggttgatcctccagaaagccttcagctcccagcagctcgtccacatc
accgtcatcaacctgtttgagctgcaccacctcagagacctgaccaccgacgcaggagag
cagagctacagcagcgagcagcagatcagctggttccagctgctcggactcttcatgtcc
ttcctgggcgtgatgtgcagccgcgctctgttcaacaggaagcgtggcgaggagatcatg
ggcgagtgtccgctgcccgccatcaaagtctctctggattggctcaaactcagacccagc
gtcttccacgaggccgccgtcgacaagaggcagtacatctggccctggctcgtctccatc
ctcaacagcttccagcccaaagaggacgacgtgtcctgttcatcagtgacgccgctgccg
gaggagtttgagctgcagggtttcctggctctccggcccgctctgaggtctctggacttc
actaaaggccatcaggggatcctggtggaccgggacggactgccggtccacagccgacac
cagagactcatcagcctggggaagtgggtcgctgacaaccagccggggctgatccagtgc
catgtgagtgaggaaggcctcctcatcttcatcaccgacatccccgagcaggccatcgag
gagccgcaggagaaggaggcgccggtgctgcaggagtcgtccaacggcgagcagacgccc
aacgacggcgggaacggcgggctgaagtcggtgctgtcggcggggaagactcagagctcg
tggcccgacggaggagaccggcccgtcgtcaccttcaaagagaacatcaaacccagagag
cagagccgcgacgccacacgcagccaccaccagaaggacgccgccaaggagcgccgagac
ttcgccaaaggaaacggagccgcggggaaaggagagctgaagagagacgggaagaggaag
agcgagatgaagaagagcggacacgagaaggcgacggacgctgggaaacaggtgaaagct
caggtggagctgaggaagactccggtgtctgaggcgaagaagacgcccgccactcaaact
caaaccacctgctcgtcccagttcatccccatccatcatcctggagccttcccccccctc
cccagcagacctgggttccccccctccgcctacgtcatcccccccccggtggcgttcccg
ggtctccaggtgaacccgggtttcaccttctccacgggggtctctgtgccgggtccgttc
ctgcagccggcggtccacacgcaggccggggctcaggccgggaagcagtcccacattccc
tacagccagcagaggccctcgggtcccggtccgggccagggtccggggccgggctcctcg
gggcccctgccccagggcccgtctcagggggggcagacccaggcgcagagcccctcccag
caggctttgcagcagctgcaggtgatgagtcagcagcagcagtctcccaccaaaccgggc
cagatgggcaagagtcctcctcaccacccgggtctgcagcagtacatgcaggtccaggac
cagcagacccagctctggtctcaggctgctctccagaagcttccgtctctgcagctctct
ctgaagcagcagcagcagcagcagagtttctacatggctcctcaggatccgctcaaactg
tacgagcaccagctgcagggtcccgccgtgcccccccctccccacgccgtgccccccccg
ccccacgcccagccccctccgccccacgcccagccccccccggccctcgccagcatggag
aagaagctgaagtaccccgacgtgaaggtgcaggacttctactgggagccgtcctacagg
atgggggaggggcttgctgtgatggacaggatgaagcggccgggcggcgccatgtgctcg
gagcaggacgccgccgccgggccacgcggacccccgttcgagctgcccaaccaggcgagg
atggagggcgtccccgaggtcgtcagccaatcatcttctctgctgcccatgtctggattc
cccatgcaggagtacaatcagaacagcatcttcagtcaggcgtacggtaagaacctgccg
cccagctccaagcccgacgctcccatgatgcaccaggagccgtctctgtactcgctgttc
gagggaacgccgtggtcgccatcgctgcccgccagctcagatcactccaccccagccagc
caatcccctcactcctccaaccccagcagcctgccgtcctccccccccacacacaaccac
ggcgccatgcccttctccaacttcgggccaatcggcacaccggacagccgggaccgccgc
atggtcgaccgctggaaggccgagaaacccggaggcgtgagcggcttcggcctggattac
ctgccggcggcgtcggcggcgtcagactggcatcaggccggaccgaccggcagctcctgg
accaatcaggagtctccgatggaggagtcgtcctccaccgttctgctggacagcctcaag
tccatctggtcgagctccatgatgcagccgggcccgtctgcgttggagcagctcctcctg
cagcagaagcagaagcagcagcgaggtcacggcgccatgaacccgccgcactga
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