KEGG   Scomber japonicus (chub mackerel): 128368831
Entry
128368831         CDS       T09718                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    128368831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128368831
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     128368831
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML_2 Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_Vps41 WD_LRWD1 WD40_RFWD3 Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 Beta-prop_HPS5 WDR54 RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 128368831
NCBI-ProteinID: XP_053185693
LinkDB
Position
12:complement(10251192..10258062)
AA seq 676 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVY
QHKDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVK
ALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGT
VIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQ
QRCIATYRVHDEGVWALQVNEAFTHVYSGGRDKKIYCTDLRNPDIRVLICEEKAPVLKME
LDRSADPPPAIWVSTTKSSVNKWSLKGMHNFRSSGEYDNDCSTPLTPLCTQPEQVIKGGA
SIIQCHILNDKRHILTKDTNNNVAFWDVLKACKGEDLGKVEFDEEIKKRFKMVYVPNWFS
VDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTRINP
MDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESML
LNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHVY
EKIINLDNESQTTSSSANDKPGEQEKEEDMAMLAEEKIELMCQDQVLDPNMDLRTVKHFI
WKSGGDLTLHYRQKST
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggccacgcatcacaggcaaaatgctgctgggcggagaaaagtacaggtgtcgtatgtc
attagagatgaggtggagaagtacaatcgcaatggggtgaacgcactccagctggaccca
gcgctgaaccggctcttcaccgctggaagggactctatcatccggatatggagtgtctac
cagcacaaagacccgtacatcgcctcaatggagcatcatacagactgggttaatgacata
gttctctgctgcaatggaaaaacattgatatctgcctcctcggatacaacagtgaaagta
tggaatgcgcacaaaggcttctgcatgtcgacgttacgaacacacaaagactacgtgaaa
gctttggcctacgctaaggacaaggaactggtggcatctgcaggtctggaccggcagatc
tttctttgggatgtgaacacactaacggcactcactgcttccaacaatactgtcaccact
tcgtcacttagtgggaacaaggactctatctacagtctggcaatgaaccagatgggcaca
gttattgtatctggatccacagaaaaggttctcagagtgtgggatccacgaacatgcgca
aaactgatgaaactgaaaggccacacagacaacgttaagtcgttgttgttgaatcgagat
ggcactcagtgcctgtcgggcagttcagacgggaccatccgcttgtggtccctcggccaa
caaaggtgcatcgccacctacagggtgcacgatgaaggggtgtgggccctgcaggtcaac
gaggccttcacacacgtatattctggaggcagggacaaaaagatctactgcactgacctg
cgtaacccagacatccgtgtgctcatctgtgaggagaaagccccggtgctcaaaatggaa
ctggacagatctgctgacccacctccagcaatctgggtctccaccaccaagtcatccgtt
aataaatggtctctaaagggaatgcacaacttcagatcatcaggggagtacgacaatgac
tgcagcacccctctgacaccactgtgtactcaaccggaacaagtcatcaagggaggtgcc
agtatcatacagtgccacattctgaatgacaagagacacatactaaccaaagataccaac
aacaatgtggctttctgggatgtcctgaaggcttgcaagggtgaagatttggggaaagtg
gagtttgatgaagagattaaaaagcgcttcaagatggtctacgtgccaaattggttctct
gttgatctgaaaactgggatgctcaccattacactggacgagagcgactgcttcgccgcc
tgggtgtctgcaaaggacgccgggttttcaagctctgatggatctgacccaaagctgaac
ctgggtggacttctacttcaggctctgttagagttctggcccagaactcgcatcaacccc
atggacgaggaagagaacgaggtgaaccacgtgaatggagagcaggagaacagggtccag
aaaggaaacgggtatttccaggtgccgccacacacgccagtcatcttcggggaagcagga
ggcagaactctttttaggttgctatgtagagattcaggaggagagactgagtcgatgctg
ctgaatgagactgttccacagtgggttattgatataactgtagataaaaatatgcccaaa
ttcaacaaaatcccattctacctccagcctcattcttcctctggtgcaaaaactctaaag
aaggaccgcctctcggccagtgacatgctgcaggtgaggaaggtgatggagcacgtttac
gagaagatcatcaacctggacaacgagtcgcagaccacaagctcctctgccaacgacaag
cccggggagcaggagaaagaggaggacatggccatgctagccgaggagaagatcgagcta
atgtgtcaagaccaggttctggatcccaacatggacctgcgaacagttaaacattttatc
tggaagagcggaggggacttgacgcttcattataggcagaagtccacgtga

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