Scomber japonicus (chub mackerel): 128368890
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Entry
128368890 CDS
T09718
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128368890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368890
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128368890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
128368890
NCBI-ProteinID:
XP_053185768
LinkDB
All DBs
Position
12:complement(6382558..6407296)
Genome browser
AA seq
2510 aa
AA seq
DB search
MAAVLLQALERTELNKLPKGAQNKLEKFVTELQSANEALRTQHERYKADSEQQYFDIEKR
LAESQEQFLSSTRDLQTLKEEHKKINEELTTLKGIEGETSEDKPTQQQTKTKYEIEAEKR
ELERLLEKKKHEVENLTEDVKRLNEKLTETNKVKTELMLKLDEVQSTETSVQHREKRMEQ
EKELLEKKIEWLTTELKTKTEEVLNSNRDKGKEILELQGNLKSSKEQVNRLESQLTSLKE
TSESQSKRAEDLNNKLKQANDERTAMEEKYRNELNAHAKLSSLYKRQAAEMETKNQELSR
AVEGLSKLLKSTGDANKVLEKKVSEGEEVKKRIEAELKEKIKKMEKELENSTTKAAGKHC
CVPSLTEEQLDSMCPSAAAIAAIVKPGMKFFDMYNAYSECQTQLQLEKQETRRVSTVLDE
IVQEVESKAPVLKRQREEYESMQRSMASLCNKLEQARTEIYSLQKEKEEIKQRSDALERE
KLRTERQLEDTSTQVCNLLVELEEARGNRVSKDDGSSADISSTTEVNSSRQLSFRSVEEL
QRQNQSLLGRLREVEEESDRRQNQVTSARVSELEASVDKLQKEVEQLREHRNQQKQLADS
NARQRDMFKALLTQSTGFNLPPQGPDSSSQPAQVRPSVPATRSTPQRAAAAESAQTTQTK
AALKQLNDAFTLYKKEKAENDRMLNDTNDRLQRQLTELRSSHAKLTSQLEFSNKRYEMLQ
ENVTAYRREISALQDRNQKMAATAQRHEHIIHTMSQDLRQANEKLALEEVRVENLTKERD
ILRQAESRLNREKEGMLAEQRNQNLLLTNFKSIQLTIERTETDTRQRLNNKIEHLEAELA
SMKTKLEQEVAQRHTLGRTMDAQLLEAKKQLETQNTLYQKTRDLLRSSEQQVTMLRNQLA
SASSSEAVTTSSNAATPATRAAGFRAPFRGAVRSPATAASQQPSQSEQEVAEAKALLRAA
EEQNNELKEQLKNANAGVEQYKSVVLTMEDSVKKEKESCSHLEIRLKESEEVQKQLEKRI
LEVEKKKQQEQEENKKAVDAVEKQVCELQRTLKSSQAEQQEALERAAAAVTLEQKAIQDS
LLQTKLAGEAQAKYERELMLHAADVEALQELKKRSQQEATHKRELEEQLNKTTSLMLEKT
AAWNAMERQLKDDLSSKIRRSEELGTQNNLLHRQMDEMAAKSRQQQQQQQQHQHQHQLDL
SFSEEGKTTEQILEILRFVRREKEIAMARCEASEGEALRYKQRVEHQDRELKDLQEAVNA
EREKMQVTVKTLAQQEEQLKKMESISSLQETNKMLKMDRNKLEQELQQAQAKLTKLQSDI
SPLHHSLSQLSEKNGSLQADKRILEEDLKRCRARVQQLVSQHKDGDVEERQKVNTEREAQ
QRRITQLIEETAKLKTELARSNASSNSAQSQLQAFRDSVARLTSERDSAKKDLETKTNDI
LERNKTITQVKKIGRRYKTQYEELKAQHDKLVEETAAKAGSEAGSSQEVQQELTKAQEEL
NKAREELTSLKEEVQKKQEEAQKSRQELEEAQKEIQQNKDKSQEVQNQLTQNQNQLTQVQ
SQLSQAQTQLQQSQKEHQQAKTHTQQVQNQLKSAQSQAQARQNQIQQIQRELQQAKESLQ
QNLASQKELQQTQQSSQQSHNQEVTNLKTALSTAENKVTEVQGQLDNLQKTVGEREADVK
RLQEQLNEANQANEASRASQSSQSIQASDANLASANQAQQEELSKLRQELLDSKNREEQL
RQQMADKEEKTKKAIMGAKTKINQLNAAKVQLSQEVEEVKQSKEDMEARMNALKSQYEGR
LLRLDRELRELRETQTHSDSREEPQDQSGAKVADQARSADQRQISLKSPAQDRGSSSLSE
PPTANIRPTTSTPSPSNKPSPSQGSKTTPRASIRPMVTPATMPMPTPTATVMPTTQTDSQ
EGASVHSTSTSLVNTASSITQPTSTQTTAFVQPTQQQATNQDASSSVEAERPSTSSSLIG
PGSKRNREDEEEEEDSRPESSHTPPTSKKLRLRPTMTPQLEGDEEMDEDLGDEGERQDSP
DDSQELPEESFPVLTEGDDIDDEGVSQSVPSDQMSFQASSMIRDVIVIDTDSESRESKEA
EEKQEDDEDEEEEEEEEEEEEEYKEEEDDDEDEDDAGDSGMRGGEESNEESREAEDEGAE
EEEPSEGTSAEENVCGASSDSQRPSEPSHSEGSNSATSESDPPRDPVHLPPTSSPSSSSL
TPRLPQPRRPPHPLPPRLYIQPPAQELGPPHTQRQSSQLRRQSTGLQRGGLQLTPGIGSN
QHFFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTRFRFGPPEDLMSQSSGSHSD
LGQLASQGGLGMYESPLFLAAHDEDGGGRSVPTTPLQVAAPVTVFTESLPSDSADNMASQ
SVPMVTASTGMASAADDGDEVFIEQEGDGPGIESSLDSQADMESTGQQSDDASLPSTSQV
PDTSSQRRSQPLISSLSGRGSRGRGDARTLLSRRGNYTRGRGAMGRGSLL
NT seq
7533 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtcctgctgcaggctctggagcggacggagttgaacaaactcccgaaaggc
gcacagaacaagctggagaagtttgtgacggagctgcagagcgctaacgaggcgctccgg
actcagcatgagcgctacaaagcagacagcgagcaacagtactttgacatcgagaagaga
ctggcagagagtcaggaacagttcctttcttccaccagagacctgcagacactcaaagag
gaacacaaaaaaataaatgaagagctgaccacactgaagggaatagagggagaaacatct
gaagataaaccaacacagcagcaaaccaagaccaagtatgagatcgaggcagagaagcga
gagctggagaggctgctggagaaaaaaaagcatgaggtggagaacctgacagaggatgtg
aaacgtctcaatgagaagctgacagagaccaacaaagtcaagacggagctgatgctaaaa
ctggatgaagtccagtcaacagagacctctgtacagcaccgggagaagcgtatggagcag
gagaaagagctgctggagaagaaaatcgagtggttaaccacagaactgaagaccaagact
gaagaagtgctcaactccaacagagacaaaggcaaagagatactggagctgcaggggaat
ctgaagagcagcaaggagcaggtgaacagactggaaagtcagctgacctctctgaaggaa
accagtgaaagccagagtaaaagagctgaagacctcaacaacaaactcaaacaggctaat
gatgagaggaccgccatggaggagaaataccgcaatgaactcaacgctcacgccaagttg
tcttcactctacaagaggcaagcagcagaaatggagactaagaaccaagaactgagcaga
gcagtggaagggctcagcaagctgcttaaaagcaccggggatgccaacaaggtgctggag
aagaaggtgtcagaaggagaggaagtaaagaaacgcattgaggcagagctcaaagagaag
atcaagaagatggagaaagagctggagaactctacaaccaaggctgctggcaaacactgc
tgtgtcccctctctgactgaggagcagctggactccatgtgtccttcagcagccgccatc
gctgccatcgtcaaacctggcatgaagttcttcgatatgtataatgcgtattcagagtgt
cagactcagcttcagctggagaagcaggagaccaggagagtgagcacggtgctggatgag
atcgtccaggaagtggagtccaaagcgcccgtcctcaaacgtcagcgggaggagtacgag
agcatgcagagatccatggcttcactgtgtaacaaactggagcaggctagaacggagatc
tacagtttgcagaaagagaaagaggagatcaagcaacgcagcgatgccctggagagagaa
aaactgaggacagagagacagctggaggatacatctacacaggtgtgcaatctcctggtg
gagctggaggaagccagagggaaccgggtgagcaaggatgacggcagctcggccgacatc
tccagcaccaccgaggtcaacagctcacgccagctgtccttccgcagcgtggaggagctc
cagaggcagaaccaaagcctgctgggaaggctgagggaggtggaggaggagagcgataga
cggcagaaccaagtgacatcagcacgtgtatctgaattggaggccagtgtggataaactt
caaaaggaggtggagcagctgagagagcacaggaaccagcagaaacagctggccgactcc
aacgccagacagagagacatgttcaaggctctgctgactcagagcaccggcttcaacctg
cctcctcaaggtccagattcttcctcccaacctgcacaagttcgtccctcagtcccagcc
actcgctccactcctcagagagctgctgctgctgaatctgctcagactactcagactaaa
gctgcgttaaaacagctgaacgatgccttcactctgtacaagaaggagaaggcagagaac
gacagaatgttgaacgacaccaacgacaggctgcagaggcagctgacagagctgcgctca
agccacgccaagctcacctctcaactggagttcagcaacaagaggtatgagatgctgcag
gagaatgtaacagcctaccgtagagagatctcagcattgcaggacaggaaccaaaaaatg
gctgcaacggcccaacgacacgagcacatcatccacacaatgagccaagacctgagacaa
gctaacgaaaagctggctctggaagaggtgcgtgtggagaacctgactaaagagcgagat
atattaagacaagcagagagtcgactcaatcgagagaaggaaggcatgctggctgagcag
cgtaaccagaacctgcttctcaccaacttcaagtcaatacagttgactatagagcgcaca
gagacagacactcgccagcgactgaacaacaagatagagcatctggaggcagagctggct
tcaatgaagaccaaactggagcaggaagtagcacagaggcacacgctcggacgcacgatg
gacgcccagctgttagaagccaagaaacagctggagacccagaacaccttgtaccagaag
accagggacttgttgcgtagttctgagcagcaggtgactatgctgagaaatcagctggcc
tccgcttcatcctctgaggctgtcaccacctccagcaacgccgccaccccggcaaccaga
gcggcaggcttcagagcaccatttagaggtgcagtacgctctccagctacagcagcctcc
cagcagcccagccaatcagagcaggaagtggcagaggcgaaagctctcctgcgtgccgct
gaggaacagaacaacgagctaaaagagcagctcaagaatgctaatgctggtgtagagcag
tacaaatctgtggtactgactatggaagacagtgtgaagaaagagaaagagtcctgctcc
catctggagatccggctcaaggagtcagaggaggtgcagaagcagctggagaagaggata
ttagaggtggagaaaaagaagcagcaagagcaagaagagaacaagaaggctgtggacgca
gtggagaaacaagtgtgtgagctgcagcgcacactgaagtccagccaagcagaacagcag
gaggcgctagagagagctgctgctgctgttacactggagcagaaagctatacaggacagc
ctgctgcagactaaactagccggagaggctcaggctaagtacgagcgggagctcatgctg
cacgctgctgacgtggaggccctgcaggagctgaagaagagatcccaacaggaagcaaca
cacaagagagaactggaggagcaactaaacaaaaccacctccctcatgctggagaagact
gctgcctggaacgccatggagagacagctgaaggatgatttgtccagtaagatccgtcgc
tccgaggagctggggacacagaacaacctcctgcaccggcagatggacgaaatggcagct
aagagtcgtcagcagcaacagcaacaacaacaacaccagcatcagcaccagctcgatctg
tcattcagcgaggagggaaagaccactgaacagatactagaaatcctcaggtttgtgcgg
agagagaaggagatcgccatggctcgatgcgaggcgtctgagggagaagctctgcgctac
aagcagcgagttgaacaccaagacagagagctgaaggatctgcaggaagctgtgaatgct
gagagggagaagatgcaggtcacagtgaagactctggcccagcaagaggagcagctgaag
aagatggagagtatcagctctctccaagaaaccaacaagatgctgaaaatggaccggaat
aaactggagcaggagctgcagcaagctcaggctaaactgaccaagctgcagtcagacatc
agcccactgcatcactctttatctcagctgtcagagaagaatggctccctgcaggctgat
aagaggattctggaggaggacctgaaacgctgcagagccagagtgcagcaactggtgagc
cagcataaagacggagatgttgaagagaggcagaaagtcaacactgagagagaggctcag
cagagacgcatcacacagctgattgaggagacagctaagctaaagactgaactggccaga
tccaacgccagcagtaactcagcccagtctcagctacaagccttcagagactctgtggcc
cgtctgacgtcagagagggactccgcgaaaaaagacctggaaacaaagactaacgacatc
ctcgagaggaacaagaccatcacccaggtgaagaagatcggacgccgctacaagacccag
tacgaggagctcaaagcccagcatgacaagctggtggaggaaacagcagctaaagctgga
agcgaggcaggttcgagtcaggaagtgcagcaggagctgactaaagcccaggaggagctc
aacaaagccagagaggagctgacctcactgaaagaggaggtgcagaaaaaacaggaggag
gctcagaagtcccggcaggagttggaggaggcccagaaggaaatccaacagaacaaggac
aagtcccaggaggtccaaaaccagctgacacagaaccagaaccagctgacacaggtgcag
tcccagctgtcccaggcacagactcaacttcaacagagccaaaaagagcatcagcaggct
aagacccacacccagcaggtacagaaccagttgaaatcagctcagtctcaagctcaggcc
cgtcagaaccagatccagcagatccagagggagctccagcaggccaaagaatccctccag
cagaacctggctagtcagaaagagctacagcagacacaacaaagcagtcagcagagccac
aaccaggaagtgaccaacctcaagactgctctgagcacagcagagaacaaggtgactgaa
gtccaaggccagctggacaacctgcagaagacggttggtgagcgtgaagcagacgttaag
cgtctgcaggagcagctgaacgaagcaaaccaggccaacgaagcgagccgagcctcacag
agctcccagtctatccaggccagcgacgctaaccttgctagtgctaaccaggcacaacaa
gaggagctgtccaaactcagacaagagctgttggacagcaagaacagagaggagcagctc
agacagcagatggctgacaaagaggaaaaaactaagaaggccatcatgggagccaagacc
aaaatcaaccaactcaacgctgccaaggtgcagctcagtcaggaggtggaagaagtgaaa
cagagtaaggaggacatggaggcgaggatgaacgctctgaagtctcagtatgaaggaaga
ctactgcgactggacagagaactccgagaactgagagagacgcaaacacactctgactcc
agagaggaaccacaggaccagagtggagctaaggtggctgatcaggccagatctgcagac
cagagacagatatctttaaagagtccagcccaggacagaggaagctccagcctgtccgag
cctcccaccgccaacatccgccccaccaccagtactccatctcccagcaacaagcccagc
ccctcccaaggcagcaagaccacgccccgcgccagcatccgacctatggttaccccagcg
accatgcccatgcccacacccaccgccactgtcatgccgaccacacagaccgacagccaa
gagggagcctctgttcactccaccagcaccagtctggtgaacacagcctcatcaataact
caaccaaccagcactcagaccacagcattcgttcagcccacccagcagcaggcaaccaat
caggacgcaagctccagcgtggaggcagagcgaccatctacatcctcttctctgattggg
ccaggttcaaagaggaaccgagaggatgaggaggaggaagaggacagcagaccagagagt
tcacacacccctccaacttccaaaaaacttcgactaagaccaacaatgacaccacagttg
gagggtgatgaggagatggatgaagacctcggggatgaaggagagagacaggactctcct
gatgacagccaggagctccctgaggagagttttcccgtcttgactgaaggggacgacatc
gatgatgaaggtgtgtcccagtccgtcccctctgatcagatgtccttccaggcctcctct
atgatcagagacgtcatcgtgatcgacactgacagtgagagccgcgagagcaaagaggcg
gaggagaagcaggaggatgacgaggatgaggaggaagaagaagaagaagaggaggaggag
gaggagtataaggaggaagaggatgacgatgaagacgaggacgatgcaggcgacagcggg
atgaggggaggagaggagagcaacgaggagagcagggaggctgaagatgaaggagcggag
gaagaggagccatcagaaggcactagcgctgaggagaacgtgtgtggagcatcgtcagac
tctcagcgcccctctgagccgtcacacagtgaaggcagcaacagcgccacgtcagagtca
gacccccccagggacccagtacacctcccccctacttcctccccttcctcttcctcactc
acaccccgcctgccccaaccccgtaggcccccacaccccctccctccacgactctacatc
cagcctccagctcaagaactgggacctccacacacacagagacaatcctctcagctgcgc
cgacaatcaacaggacttcaacgtggtggacttcaactaactccaggaataggcagtaat
caacatttcttcgatgatgacgacaggatggttcccagcactcccactctggtggtccca
cacagaactgatggcttcgctgaggctatacactctcctcaggttgcaggtctgtccacc
aggttcaggtttggacctccagaagatctgatgagtcagtcatcaggctcacactctgac
ctgggacagctggcctctcaaggaggtctgggtatgtatgagtctcctctgttcctggct
gctcatgatgaggatggaggaggaagaagtgtccccactacacctttacaagtggctgca
ccagtgacggtcttcacagagtctctgccctcagacagtgccgacaacatggcatcccag
tccgttcccatggtaaccgcctccaccgggatggcctcggctgcagacgacggagatgag
gtgttcattgagcaggaaggagacggccctggcattgagtcttcattggacagccaggca
gacatggagtcaacaggacagcagagtgatgatgcatcacttccatccaccagccaagtc
cctgacaccagcagtcagcggcgcagtcagcctctgatcagcagcctgtcaggcagagga
agcagagggagaggagacgccaggacgttactcagccgcagaggaaattatactcgagga
agaggagccatgggcagagggagcctcctctag
DBGET
integrated database retrieval system
