Scomber japonicus (chub mackerel): 128368927
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Entry
128368927 CDS
T09718
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4-like isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128368927
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sjo02000
]
128368927
Transporters [BR:
sjo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128368927
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Metallothio_2
Motif
Other DBs
NCBI-GeneID:
128368927
NCBI-ProteinID:
XP_053185825
LinkDB
All DBs
Position
12:25342463..25379694
Genome browser
AA seq
2322 aa
AA seq
DB search
MKTSSQIRLLLWKNWTLRKRQKIRFLIEICWPVLLFIGLVWLRKANPLYQQHECHFPNKA
MPSTGILPWIQGIFCNANNPCFRYPTRGESPGVVSNYNNSVLAKFYADAQELLLNDEEIQ
QLGRLWSQMSSFSNFMETLRNRPSSVSGRGLKINDILKDDEVLTAFLLRDAGLSNSIVYE
LVNAEIRLEQFAFGIPDLQLKDIACSQALLERFIIFPSRMGLHGVRNAMCALSQQRLQKI
EDILYANLDFFKIFKLMPQVLDRSSEGIDLHFWGQVLKGTSEKIQVLMEREGSQELLKAV
TSLFRAGGPPSFTQLMSSVSSLFCGYPEGGGSRVLSFNWYEDNNYKVFLGVNGTKSYNYV
YDDTTTPFCNSLMQTLESNPVTKIVWNSVKPLLMGKILYTPDSPAVRKILKSANTTFEEL
ERLRNMAKAWEEMGPQLWAFFHNSVQMNMIRDTLRNPTVTHFMDESLEDTDFTTKDIINF
LHNGPDEEREVGMPNFDWRNIFNITDELIRTFNQYGECISLDKFVAFSDESQMIHQALYL
LEENKFWAGVVFMDMYPWTTSVPPHVKYKIRMDIDAVERTNKIKDRYWDPGPRADPMEDQ
RYIWGGFAYLQDMIEHGIIKLHTGNDWPLGVYVQQMPYPCYVDDLFMITLNRCFPIFMVL
AWIYSVSMTVKSIVLEKELRLKETLKAMGVDNGVIWYTWFIDSFIIMTLSTALLTSIVMG
GKVLNYSNPLLVFFFLLTFTVTTIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHILCFA
WQDRITKNMKLAASFLSPVAFGFGTEYLSRYEEQGLGLQWDNIQTSPLEKDSYSFLTSVL
MMVIDAVLYGILAWYLDNVFPGQYGVGRPFYFPFQSSYWQRATPPHTEMADQDPENPEPE
NMEKDTASMGTPDTCNGTADRKVCKHQSIRDRIEREKELLRRQEETPNQDEEGQDSGKEG
QLFFESDPVGLVLGVEIQDLVKVFNGGSRPAVNCLNINFYEGQITSFLGHNGAGKTTTMS
ILTGIYPPTSGTAYINGRDIRTDIDIIRTSMGMCPQYNILFNHLTVEEHILFYSLLKGRS
QAEAEREVEDMLVDLGLPHKRDDEAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTSGVDP
YSRRSIWDLLLKYRAGRTVILSTHHMDEADLLSDRIAIISKGQLHCCGSPLFLKNCFGVG
FYLTLVRRMKELKKGESDCDCASDCSCSCSICTRYKDQSQNQSQHLDRVLDGDIDNITTL
IHHHVPEAKLIEMIGQELTYLLPNKGFKHRAYASLFRELEETLADMGLSSFGISDTSLEE
IFIKVTADGEAENNATTPEQWMLLQRSNGTKIGADGKEEHNGVTQSNGTTHNASDSSAGR
GSHQVKGTTLTLKQFHALLVKRFHHATRSQKDFLAQIVLPASFVLIALIFTMIVPPFGEY
PSLTLSPWMYGQQFTFFSNEQPFDPTMKRFTERLLDPPGLGTRCMEGEPLGMSCGNYTSE
WEHPDVSPLVSNILQSPAWNQRNPSPSCQCSTKKKLTMMPICPIGAGGLPPRQRTEATGD
KMLDLTERNISDYLVKTYPTLIRASLKSKYWVNEQRYGGLSVGGQLPILDVRPKDIQDVF
HQLGRMLNITGGYYSRLALQEIGPFLRYMESEFNIKVWYNNKGWHAMVAFMNVANNAILR
AFLPPSAKPVEFGITAINHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASFVLY
LIQERETKAKHLQFVSGVSPLVYWVANFFWDMMNYSISTAMVVGIFMAFNKKCYTSPSNL
PALIALLLLYGWAVTPMMYPMSYIFSIPSTAYVSLSCINLFIGINSSAITFILELFENNR
SLLTFNEWLKKGLLIFPHFCLGRGLIDMAMNQAVTDVYARFGEEYTADPFRWDFVGKNVA
FMAVEGFVYFLLNLLIQYRFFLDHWLSDNKKTSVKDEDDDVADERQRIYEGGSKSDILMI
RDLSKMYVGRKRAAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGEATVAG
YSILSEILDVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPESEIPRVAEWGIQKLGL
TEYADRYAGTYSGGNKRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAIMSVIQDG
RAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVVTMKIKAAKPGVSP
ELEPVESFMESCFPGCVQREKHYNTLQYEITSSSSLARIFQLVVANKERLSIEDYSVSQT
TLDQVFVNFAKQQTGEDEDVTLQRRTAGGRKDIKIAPVKRKT
NT seq
6969 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaagctcccaaatccgactattactgtggaaaaactggactctccgcaagagg
cagaagattcgcttcctgattgagatctgctggccagtcttgttattcattggtctggtg
tggctaaggaaagccaatccactgtaccaacaacatgagtgtcatttcccaaacaaggcg
atgccctccacagggattctaccctggatccagggcatcttctgcaatgccaacaacccc
tgcttcagatatccgaccagaggagagtctccaggagttgtatccaactataacaattct
gtattggcaaagttttacgctgatgcccaggagctcctgctcaatgacgaggagatccaa
cagttgggccgtctctggagtcagatgtcgtccttctcaaacttcatggaaacattgcgc
aacaggccgtcttcagtgtcaggtcgtgggctgaagataaatgacattttgaaggatgat
gaggttctcacagctttcctgttgcgagacgctggcctgtctaactctatagtttacgag
ctcgtcaacgcagaaattcgactagaacagtttgcctttggcatcccagacctgcagttg
aaagacatagcctgcagccaggccctactggagcgcttcatcatcttccccagccgcatg
ggcctccatggggtgcgcaacgccatgtgtgccctcagtcaacaaagactgcagaagata
gaggatatcctgtatgctaatctggacttcttcaaaatcttcaaactgatgcctcaggtc
ttggacaggagctccgaagggattgacctacacttctggggtcaggttcttaaagggacg
tcggagaagatccaagttctgatggagcgggaaggctctcaggagctcctgaaggccgtt
acctctctgttcagagctggaggtccgccctccttcacccagctgatgtccagcgtgtcc
agcctcttctgtggatacccagagggaggtggctccagggtgctgtccttcaactggtat
gaggacaacaactacaaggtgtttctaggggtgaatggcaccaagagctacaactatgtc
tatgatgacaccaccactcctttctgcaactccctgatgcagaccctggagtccaaccct
gtcacaaaaatcgtgtggaattcagtcaaacccctgctgatgggaaaaatcctgtacacc
cccgactcccccgccgtccgcaagatattaaagagtgccaacacaacatttgaggagtta
gagaggctgaggaacatggccaaggcgtgggaggagatgggacctcagctctgggctttc
ttccataacagtgtccagatgaacatgatcagggacaccttaagaaacccgacagtgact
cacttcatggatgaaagtctggaggacacagattttaccaccaaagacattattaacttc
ttgcacaatggtccagacgaagagagggaggtgggcatgcccaactttgactggaggaac
attttcaacatcactgacgagcttatacgcacgttcaaccagtatggagagtgcatcagc
ctggataagtttgtggccttcagtgatgaatcccagatgatccaccaggccttgtatcta
ctagaggagaacaagttttgggctggtgtggttttcatggacatgtatccctggaccaca
agtgtcccaccacatgtcaagtataagatccgcatggacattgacgcagtggagcgcacc
aacaagatcaaagacaggtactgggaccccggccccagagcagaccctatggaggatcag
aggtacatctggggaggttttgcgtacctgcaggacatgattgaacatggcatcatcaag
cttcacacaggcaacgactggccacttggggtctacgttcagcagatgccctatccatgc
tatgtggatgacctcttcatgatcacactgaaccgctgcttcccgatattcatggtgttg
gcttggatctactctgtgtccatgactgtgaaaagcatcgtgctggagaaggagctgcgc
ctcaaagagactctcaaagcaatgggggttgacaacggagtcatttggtacacctggttc
attgacagtttcatcataatgactttaagcacggcgctgctcacctccatcgtcatgggt
gggaaggtgctaaattacagcaaccccctccttgtcttcttcttcctcctgaccttcact
gttaccaccatcatgcagtgtttccttatgagtgtgttcttcaacaaagccaacctggca
gctgcctgcagcggcatcatctacttcaccctctacttgccccacatcctctgctttgcc
tggcaggaccgcatcaccaagaacatgaagttggctgctagctttttgtctccagtggcc
tttggatttgggacagagtacctgtcacggtacgaggagcaaggtttgggtctgcagtgg
gataacatccagactagcccactagagaaagattcatactctttcctcacctccgtcctc
atgatggtgattgatgctgtcctctacggcatcctggcctggtatctggataatgtcttc
ccaggacagtatggtgttggtcggccattctacttcccattccagtcatcgtactggcaa
agagctacacctccacacacagaaatggctgatcaagatccagagaatcctgaaccagag
aacatggagaaggacactgccagcatgggcacaccagatacctgtaacggcacagctgac
aggaaagtctgtaagcaccaaagtataagagatcgaatagagagagagaaggagctgctg
agaagacaagaggaaactccaaaccaggacgaggagggtcaggactcaggaaaggaaggc
cagttgttctttgagtctgacccagtgggcctggtgttgggggtagagatccaggacctg
gtgaaggtgtttaatggaggttctcgtcctgctgtcaactgtctcaacataaatttctac
gagggccagatcacctccttcctagggcacaacggtgctggaaaaaccaccaccatgtcc
atcctgactggcatataccctccgacatctggcacagcgtacattaatggaagagacatt
aggactgacatagatatcatccgtacctctatggggatgtgtcctcagtataacatcctc
ttcaatcatctcacagtggaggagcacatcctattctattcactgctgaagggtcggagt
caggcggaggcggagagggaggtcgaggacatgctggtagacctgggactgcctcacaag
agagacgacgaggctcaaaatctctcaggtggtatgcagaggaaactgtcagttgccatg
gcgtttgtcggagggtcaaaggttgtcatcctggatgagcccacatcaggagtggatcct
tattctaggagatctatttgggacctgcttctgaaatatagagctggccgtacagttatt
ctgtccactcaccacatggatgaggccgacctgctgagcgaccgcatcgccatcatctcc
aaaggacaactccactgttgcggttcccccctctttctcaaaaactgttttggagtgggt
ttctatctgacgcttgtacgccgtatgaaggaacttaaaaaaggagagagcgactgtgac
tgtgcctcagactgctcctgttcctgctccatatgtaccagatacaaagatcagtctcag
aaccagtcccagcatctcgatagagtcctggatggcgatatagacaacatcacgaccctc
atccaccaccacgtccccgaagccaagctaatcgagatgattggccaagagttgacctat
ctgctccccaataagggcttcaagcatcgggcatatgccagcctgtttagggaactggag
gagactcttgctgacatgggcctcagcagcttcggcatctcagatacatcactagaggag
atattcataaaggtcactgcagatggagaagcagagaataatgccaccactcctgagcag
tggatgttactgcagagaagcaacggcaccaaaattggtgcagatggaaaagaagaacat
aatggcgtgacgcaaagtaacggcacgacccataatgcatcagacagcagtgcagggagg
ggctcccatcaggtgaaagggacaacactgaccctgaagcagtttcatgctctgctagtg
aagaggttccaccacgccacacgaagccagaaagatttcttggcacagatcgtcctgcct
gccagttttgtcctgattgcactcatcttcacaatgatcgtccctccattcggggagtat
cccagtctgactctgagcccctggatgtatgggcaacagttcaccttcttcagtaacgag
caaccgtttgaccccacaatgaaacgcttcacagagcgcttgttagacccaccgggcctg
gggacccgctgtatggagggagaaccactgggaatgtcctgcggtaactatacatcagaa
tgggagcatcctgacgtctcccctctggtcagcaacatcttacagagtcctgcgtggaac
cagagaaacccctccccttcctgccagtgcagcaccaaaaaaaagctgaccatgatgccc
atctgtccaattggagcaggaggcctaccccctcgccaacggaccgaagcaacgggagac
aaaatgctggatctgacagagagaaatatctctgactacctggtcaaaacctatcctact
ctgatcagagcaagtttgaagagcaaatactgggtgaatgaacaaagatatggcggtttg
tcagtagggggacagcttcctatacttgacgtccgccccaaagacattcaggatgttttc
catcaacttgggcgaatgctcaacatcacggggggttactattctcgacttgcactccag
gagatcggtcctttcttacgatacatggaaagtgaattcaacatcaaggtatggtacaat
aacaaaggctggcatgccatggtggccttcatgaatgtggccaataacgccattttacgg
gccttcctacccccatctgccaaacctgtcgagtttggcatcaccgccatcaaccaccct
ctcaacctcaccaaagagcagctttctgaagtcactgtgttgaccacttcagtagatgcc
gtggtggcgatctgtgtgattttcgccatgtccttcatccctgccagctttgtcctctac
ctcattcaggagcgtgagaccaaagccaaacacctgcagtttgtcagtggggtcagccct
ttagtttactgggtggccaacttcttctgggacatgatgaactactctatcagcactgca
atggtggttggcattttcatggcttttaacaaaaagtgttacacatcaccatccaacctg
ccagctctaatagcactgctcctattgtatgggtgggcagtgactcccatgatgtatcca
atgtcctacatattcagcatcccaagtactgcgtatgtctctctgtcctgcatcaacctg
ttcataggcatcaacagcagcgccatcaccttcatcctggagctttttgaaaacaataga
tctttgctgacgttcaatgagtggctgaagaaaggcctgctgatatttcctcacttctgt
ctggggcgaggtcttatagacatggccatgaaccaggctgttactgatgtttatgccaga
tttggtgaggagtacacagcagaccctttccggtgggactttgtggggaaaaatgttgct
ttcatggcagtggaaggctttgtctactttcttctcaatcttctgatccagtatcgtttc
ttcttggaccactggttatcagacaacaagaagacttcggttaaagatgaagatgacgat
gtggcagatgagaggcagagaatttatgaaggagggagcaagtcagacatcctgatgatc
agagacctctctaagatgtatgtgggcaggaagagggcagctgtggaccggatttgtgtg
ggtgtccctgcaggagagtgctttggtctcttgggagttaatggagctggaaaaactacg
accttcaaaatgctgactggtgacactgatgtcagctctggggaagcaactgtggctggt
tacagcatcctgtcagagattctggatgtgcaccagaacatgggctactgccctcagttt
gatgccatcgatgagctcttaaccggcagagagcatctctatctctacgctcgtctcaga
ggagtgcctgagtcagagatccccagagtggcagagtggggcatccagaagctgggtctg
acagagtatgcggaccgctatgcagggacttacagtggaggcaacaagcgcaaactctcc
acagctattgcaatgattggctgccctgctctggtgctgctggatgagccaacgacaggg
atggacccccactctcgacgtttcctgtggaatgctatcatgagtgtcattcaggatggc
agggccgtggtgctaacatcacacagtatggaggagtgtgaggcgctctgcactcggttg
gccatcatggtgaatgggaccttcaagtgtctaggcaccatccagcatctcaagtacaaa
tttggtgacggctatgtagtgaccatgaaaatcaaagcagctaaacctggcgtgtccccc
gagctggagcctgtcgagagcttcatggagagttgcttcccaggctgcgttcagagggag
aagcactacaacacgctgcagtacgagatcacctcctcctcctccctcgccaggatcttt
cagcttgtggtggccaataaagagaggctcagcatcgaagactattctgtttcccagaca
acactagaccaggtgttcgtcaactttgccaagcaacaaacaggagaagatgaggacgtt
acgttacagagacgaactgcaggtggacgaaaagacatcaagatcgcaccagtgaagagg
aaaacatga
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integrated database retrieval system
