Scomber japonicus (chub mackerel): 128368936
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Entry
128368936 CDS
T09718
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128368936 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368936 (fip1l1b)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128368936 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
128368936
NCBI-ProteinID:
XP_053185840
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Position
2:22728540..22737262
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AA seq
565 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDESESKDEDEEAKLNAAVSAPADASTDDAAVAHA
TGNGVASEATGEAAGEDVDTDSDSDDDDDDVRVTIGDIKTGAPQYTPYGAPPVNLNIKTT
GSRPYGQVTAKMKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDT
WKAYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDMSSLPVHTSKPDFTSPVNLYK
SAVSQVTRISPPQWTGPPPQDMSYYTMINTDLTQKTSGTIDVIGGGTATISRVEGRRRHN
LEGNNIQVISEHSTSDTEPAPAKMPAFFPPGPLPPNIPPPPFLPPPPNVSNAPPLIPPPR
LPITVPPPGFPPPPSGPPPAIIPTMDSGHPGSYDGRSVPPYPFPQGAYPPPMAGGVPPPW
PPMMDNSKPWDYYSRRDDKRDKERERPRERTHEREREREHSPSAMGYTSEEERYRYREYQ
ERGYGERHRDRTSREKEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKK
SKRSKEGKEASEEISADQGNQEAME
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggacaaaacaaccaccacggatgccagcgccggagatgaggag
gaggaatggctgtatggagatgaatctgagagcaaagacgaggatgaagaagccaaactc
aatgctgctgtcagtgcacctgcagacgcttcaacagacgatgctgctgtggcacacgct
acagggaacggagtggcctctgaggcaactggtgaagcagcaggggaggatgttgacaca
gacagcgacagtgatgacgacgacgacgatgtccgcgtcaccattggagacataaaaacg
ggagcaccacagtacacaccttatggagctccacctgtcaatctcaacataaaaacaaca
ggctccagaccttacggacaagtcaccgcaaagatgaaaggagtggacctggatgctcct
ggaaacatcaatggagttccagtgctggaggtggacatggagtcttttgaagagaaaccc
tggaggaagccaggagcggatctgtcagactactttaactacggcttcaatgaagataca
tggaaagcttactgtgagaaacagaagaggttgcgcatgggcctcgaagtctctactgtc
ggctcagtgacgagcaaaatcaccgttcaacaaggtaggacaggcaacgagaaggacatg
tccagtctgcctgttcacacttccaagccagacttcacatctccagttaacctgtacaag
tctgccgtcagtcaggtcaccaggatctctccccctcagtggactggcccgcctcctcag
gacatgtcctattatacgatgataaatacagacctcacacagaagacaagcggtactata
gatgtgatcggtggagggacggccaccatcagcagggttgaggggcgacgcagacacaac
ttagaaggcaacaatatccaggtgatctctgaacactccacatctgacactgaacccgct
cctgctaagatgcccgccttcttccctcctggaccacttcctccaaacatacctccgccc
cctttcctccctccacctcccaacgtcagcaatgcaccgccgctcatccccccgcctagg
ctacccatcactgtccctccacctggttttcctcctccacctagtgggccccctcctgct
atcattcccaccatggacagtggccaccctggaagttacgacggccgctctgtgcccccg
tacccgttccctcaaggtgcatacccaccacccatggctggaggtgtgccccctccttgg
cccccgatgatggacaactctaagccctgggattactattcccgtcgagacgacaagaga
gacaaggaaagagaaaggcccagggagaggacgcatgagcgggagagagagcgggagcac
agcccctcagcaatgggctacaccagtgaagaggagcgatatcgttaccgtgagtaccag
gagcgtggttacggagagcgccatcgtgaccggacgagcagagagaaggaggagagacac
agagaaaggcggcaccgggagaaagaggaaggacgtcacaagtcgtctcgcagcagcagt
agcagaaggaggcacgacagcgaggagggcgacagccaccgaaggcacaaacacaagaag
agcaagaggagcaaagagggcaaagaggcgagcgaggagatcagcgcagaccaagggaac
caggaggccatggagtga
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