Scomber japonicus (chub mackerel): 128368952
Help
Entry
128368952 CDS
T09718
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128368952
03015 mRNA surveillance pathway
128368952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128368952
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128368952
5.6.2.5 RNA 5'-3' helicase
128368952
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128368952
mRNA cycle factors
Common to processing body (P body) and stress granule
128368952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128368952
NCBI-ProteinID:
XP_053185857
LinkDB
All DBs
Position
12:13876673..13891677
Genome browser
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPVIKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPNPMTSMNL
PIPFNLVMPPIPPPGYMGQVNGPTTGRGGGMKGKAGSGGGGGNRGGRQRNRGNMGNHSGG
NGGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcccagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagactcagacccagggccaaacccagagtcagctggacagccaggttaatggt
cctgacggggtgctgcagaatggagacgaccctgtaattaaagccagtcagttgttggcg
gagttgaactttgaggaggatgaggaagacacctactataccaaggatcttcctgtgcat
gcctgcagttactgtgggattcatgacccagcctgtgtggtgtactgcaacactagcaag
aagtggttttgcaacggccgtggaaacacatccggcagccacattgtgaaccatctggtg
agagcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaactgtgctg
gagtgctacaactgcggctgccgcaatgtcttcctgctgggcttcatccccgcaaaggct
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcgcagtggcagcctctcattcaggaccgctgcttcctgtcctgg
ctggtcaaaatcccgtcagagcaggagcagctcagggcccgccagatcaccgcccagcag
atcaacaagctagaggaactctggaaggaaaatcccaccgctaccttggaggatttagag
aagcctggtgtggatgaggagccccaacatgtcctgctacgttatgaggatgcctaccaa
taccagaacatatttggtcctcttgtgaagctggaggctgactatgacaagaaactcaaa
gaatcccagactcaagacaacattacagtcagatgggacttgggtctgaacaaaaagagg
attgcttatttcaccctgcccaaaacagattcagatatgcgactaatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggcattggacatgtcatc
aaagttcctgataactatggtgatgagattgccatagagctgaggagcagtgctggggct
ccagtggagatcccacacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcaaagcgccctaaagacatttgctgtggatgagacgtcagtgtctggttacatc
taccataaactgctgggacatgaggtggaggatgtggtcatcaagtgccagctgcctaaa
cgcttcactgcccaaggactacctgacctcaaccactcccaggtgtatgctgtaaagacg
gtgctgcagcgtcccctcagcctgatccagggtcctcctggcacagggaagactgtaact
tctgccaccatcgtgtaccacctggctagacagggcaacgggccggtgcttgtgtgtgct
cccagtaacattgccgttgaccagttgacagagaagatccaccagactggacttaaagta
gtgaggttgtgtgccaagagcagggaggccatcgactcacctgtgtccttcttggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaagcttcaacaactgaag
gatgagacaggagagttgtcctcctcagacgagaaacgctacagggctctgagacgcact
gctgagagggagctgcttatgaatgctgatgtgatctgctgcacttgtgttggggcgggg
gatcctcgtctggctaagatgcagtttagatcaatcctgattgatgagagcacccaggcc
accgaacctgagtgcatggtgcctgtcgtcctgggtgccaagcagctgatcctggtgggt
gatcactgccagctgggccctgttgtgatgtgtaagaaggcagctaaagcaggtctctcc
cagtctctgtttgagcgcctggtagtcttagggatacggccaattcgtctgcaggtccag
taccgtatgcacccggcactcagcgccttcccctccaacatcttctatgagggctccctg
cagaacggagtcactgccggagaccgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaagccgatgttcttctatgtcacccaaggccaagaggaaattgccagctctgga
acatcatatctcaacagaactgaggcagccaatgtggagaaaataaccaccaggttgctg
aaggctggagcaaaacctgatcagatcggcatcatcaccccttatgagggacagaggtct
tacctggtccagtacatgcagttcagcggctccctccataccaaactgtaccaggaggtg
gagatcgccagtgtggatgctttccaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatccacgtcgcctcaacgta
gcgctcaccagggccaggtatggtgtgatcattgtgggaaaccccaaagctctgtctaag
cagcccctgtggaaccacctgttgaactactacaaggagcagaaggtcttggtcgagggc
ccccttaacaacctgagagagagcctcatgcagttcagcaagcctcgcaagctggtcaac
accataaaccctgggggtcgatttatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttatgatcgcagcagcaacgggcgcacgtccaacatgtatttccag
actcatgaccagattggtatgattggcacaggccctaatcccatgacttccatgaacctc
cctatccccttcaacctagtgatgccccccatacctccacctggctacatgggacaagtc
aacggacccacaacaggtcgtggtggtggtatgaaaggcaaggcaggcagtggaggaggt
ggcggcaacagaggtggccgtcaaagaaaccgcggcaacatggggaaccacagcggaggg
aacggagggcagcatggaggccatatgagcggcagtcaggccagccaggacctgggctcc
cagcctttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtcacag
atgagccagcccgggctctcccagcctgaactctcacaggacagttacctaggagacgag
tttaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggcc
taccaacacggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
