Scomber japonicus (chub mackerel): 128369031
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Entry
128369031 CDS
T09718
Name
(RefSeq) macrophage mannose receptor 1-like
KO
K06560
mannose receptor, C type
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
128369031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128369031
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128369031
04090 CD molecules [BR:
sjo04090
]
128369031
04091 Lectins [BR:
sjo04091
]
128369031
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Phagocytosis
C-lectin receptors
128369031
Pattern recognition receptors [BR:
sjo04054
]
Membrane-bound pattern recognition receptors
C-type lectin receptors
128369031
CD molecules [BR:
sjo04090
]
Proteins
128369031
Lectins [BR:
sjo04091
]
C-Type lectins
Others
128369031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
fn2
UL45
Chordopox_A33R
CysR_MRC2_N
Ricin_B_lectin
Motif
Other DBs
NCBI-GeneID:
128369031
NCBI-ProteinID:
XP_053185960
LinkDB
All DBs
Position
12:22186690..22205643
Genome browser
AA seq
1425 aa
AA seq
DB search
MSAALRLIIRMLITRIALAAFVLFIKTPQCSATNDSPFSLTNKATGFCLTKKSTRCLDVR
WTTGDRLFVISTRKCLGAQGKTVGSEVSLYDCDDNSELQKWECKNETLLALKGQQLYIEM
KADETVALSKTISPNNHFTITGTSSGACTRTFREYYTINGNAFGKICMFPFLYKDRWFGD
CTTFDSSVKRPWCAVETKFEHEQWGYCPTTSRDHWMKNVVTGTYYQVNSQSVLTWPQAET
SCKQQSASLLSITNDHEQAYITVLMGSAIQKLWIGLVLNPEHGWQWSDGKPFRYLRWGIG
NPLPNPGHNCALIDVAQQYSWQSSSCTKKTGYICYRDGPLPIPPQIEQGFCSNPWIPYNG
HCFHLLRTLQTWTDAQRECRKEGGDLVSIANVEDQSFVISQLGYGATDELWIGLNDRTTE
GLFDWSDHSDVRFTSWEFGKPTVSTDTNDCVLIRGENGNWADRGCNEKHGFICMKQSETE
RTGDEVVVDIGCKAGWKRHGSYCYFVGTEAKTFDEAKDDCKTSDSILADVSNGVDNAFLI
SMVGLRPEKYFWLGLSNQKNIDAFEWTNTDNVRFTHWNAEMPGHQQGCVAMTTGVFAGLW
DVLPCTNKEKYICKHLAEGAVLTPAPPTLTPPKCPDGWTQVGTRNMCSKFFTGPRASEKT
WFEARDYCRAIGGDLLSIHNANELFMRRHGKAWIGLHIPDGNTGYVWSDGSAVNFQHWQD
GEPNNFNNAESCAEFHMSSADESGSWNDVHCESYNDWLCQIRGGVTPRLPPNDTASDYNT
TSDGWLEWRGNQYYINRMSMPMEDARQYCKNRHGDLVTINSEAENVFLWKQISRNYETYY
IGLSVDLDGSFWWMDESPLAFQKWDENQPDSNAFDKTCVAMTYYMGFWRNFNCGYEYKSI
CKRGTSAPVNTTAAPTVPPKGGCSFSWKKFDSKCYNIITDRMNTWEEARKYCANIGGNLA
SIPTRRVQAFLITKMAEVGGKDLWIGLSSLNNDGFFWTDGRPRRYTNWGYAKRRPGTFYQ
RWNEEDCVAMTSNSNFGIGKWIVKSCNTTNGFVCLKNLDPAVKSETEPTVPDIYVALGND
SIKAVTQNLTWDDARKHCEGDHANLASLRNDWTQAYVELLAMTLKAPLWIGLNKEKTNGY
FRYIDGWNLNLASWAPGEPRKDQPCVYMDVDGKWRTASCNLTMNSVCLQSTDVAPTESTS
FPGACPEESPVESAWLPFKGHCYLFVTQETEWPQAAANCAIFGGKLASIGDPSEQAFIKS
NVEVLKDSHSSFWIGLYKTHKGVWKWLDNTVLDYINWSPGDFERDYGEIASDDGKWSSGR
GWHDRAYICETPKVMPTDDGAKPEPHRQKGDGSRAHTSLIVVLIIVITSTLIVTAFFFYK
KSPRPLPTFDNPLYFGNERSQPDVVDTNKLIEKAEEENPEPIISL
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgctctgagacttatcataagaatgctgatcacaaggatagctctagcagcc
tttgtgctcttcatcaaaacacctcaatgctcagcaactaatgattcaccattctccctc
actaacaaagccactggtttttgtctgacgaaaaaatcaactcgctgccttgacgtgcgc
tggacgaccggtgatcggctttttgttatctccaccagaaagtgccttggagcgcagggc
aaaactgtgggcagtgaagtgagcctctatgattgtgacgacaacagtgaacttcaaaag
tgggaatgcaagaatgaaacactgcttgccctcaaaggccaacagctctacattgaaatg
aaagctgatgaaacagttgccctctccaaaacaataagtcccaataaccacttcacaatt
acagggacatccagcggtgcttgcacgagaacattcagagaatattataccattaatgga
aatgcatttggcaagatctgcatgtttccattcctgtacaaagaccggtggtttggggac
tgcactacgttcgactcctctgtgaagcgtccttggtgtgcagtggaaaccaaatttgaa
catgagcagtggggatactgcccgactacttccagagaccactggatgaaaaacgttgta
acaggaacttattaccaggtgaactcacagtcagttctgacttggccccaggctgaaacc
agttgcaaacagcagtctgcctccctgctcagtatcaccaatgaccacgagcaggcttac
atcacagtactaatgggatcagcgatccaaaaactttggattggtctggttctgaaccct
gaacatggctggcagtggtctgatgggaagcccttccgttacctgagatggggcattgga
aatccacttcctaatccaggacacaattgtgcacttattgatgttgctcagcagtactcc
tggcaaagttcatcctgcaccaagaaaacaggctacatttgctacagagatgggccccta
ccaattcctccacaaattgagcaaggattttgttcaaacccttggattccttacaatggc
cactgcttccaccttctccgtactcttcaaacatggactgatgctcagcgagagtgccgc
aaagaagggggggacctcgtgagcattgcaaatgtggaagatcaaagctttgtcatctct
caacttggatatggagccacagatgagctctggattggactgaatgatagaacgacagaa
gggctgtttgactggagtgaccactctgatgtcaggttcaccagttgggaatttgggaag
ccaactgtctctacggatacaaatgactgtgttctcataaggggagagaatgggaactgg
gcagatcgcgggtgtaatgagaaacatggctttatctgtatgaagcagagtgaaacagaa
cgcactggggatgaagtagttgtggatataggctgcaaagctggttggaaaagacatgga
tcctactgctactttgtagggacagaggccaaaacgtttgatgaagccaaagatgactgc
aagacctctgactccatcttagctgatgtttcaaatggggtggataatgcatttcttatc
agcatggtgggactgaggccagagaaatatttctggctggggctctcaaaccagaaaaac
attgatgcatttgagtggaccaacacagacaatgtgagatttactcactggaatgctgaa
atgccaggtcaccaacagggctgtgttgccatgacaactggggtttttgctggactctgg
gatgtgttgccctgcaccaataaagagaaatacatctgcaagcacttggcagagggggcc
gttttaacccctgcaccaccaactcttacacctcctaagtgtccagacggctggactcaa
gtgggaaccagaaatatgtgctctaagttctttacagggcctcgggcatctgagaagacc
tggtttgaagccagagattactgtagggccatcggaggagacctgctcagcatccacaac
gccaatgagctatttatgagacgccatggaaaagcctggattggacttcatatccctgac
ggaaacactggttacgtatggagtgatggctccgcggtgaactttcaacactggcaggac
ggagagccaaataattttaataatgctgaatcttgtgctgaattccacatgagtagtgct
gatgaaagtgggtcttggaacgatgtgcactgtgagagttacaatgactggctatgtcag
attcgcggaggagtgactccaagactacctccaaatgatactgcatcggactataatacc
acgtcagatggttggcttgagtggagagggaatcagtattatataaacagaatgtcaatg
cccatggaagatgctcgtcagtactgtaaaaatagacacggtgacttggtgacgatcaac
agtgaggctgaaaatgtcttcttatggaaacagatatcgagaaactatgagacctactac
attggtctgtcagtggatctcgatgggtcattttggtggatggatgaatcgccgttggca
tttcaaaaatgggatgagaatcagcctgattctaatgcctttgataagacctgtgttgct
atgacttactatatgggcttctggcgtaatttcaactgtggctatgagtacaagagtatt
tgtaagcgtggaacctcagcacctgtcaataccactgcagcccccacagttcctcctaaa
ggtggctgctcattctcatggaaaaaatttgactcaaagtgctacaatatcatcactgac
aggatgaacacctgggaagaagcaaggaaatattgcgctaacataggaggaaatttagcc
tctattcccacaaggcgtgtgcaagcatttttgataaccaagatggctgaagtaggagga
aaagacttgtggattggtctgagtagcttaaataatgatggctttttctggactgatgga
agaccgaggcgatacaccaactggggctatgctaaacggcgtccaggaaccttttatcaa
agatggaatgaggaagactgtgttgcaatgaccagtaattctaactttggtatcgggaaa
tggatagttaagtcctgcaataccaccaatggatttgtctgtcttaagaatcttgaccca
gcagtaaaatctgaaacggagccaacagttcctgacatctatgtagctctgggaaacgac
agcatcaaggctgtgactcaaaatctgacctgggatgatgccaggaaacactgtgaaggt
gatcacgccaatttggcaagcctgcggaacgactggacacaggcttatgtcgaactactg
gctatgactcttaaagcccctctctggattggacttaacaaagagaagaccaatggttat
tttaggtatattgatggctggaacttgaaccttgcctcctgggccccaggtgaaccaagg
aaggaccaaccatgtgtgtacatggatgtggatggaaaatggaggactgcttcttgcaat
ctgaccatgaacagtgtgtgcttgcagtctacagatgtggcacctacagaatcgaccagc
ttcccaggagcgtgccctgaagagtcgcctgtggaaagtgcctggctgccatttaagggc
cattgttatttgtttgtcacacaagaaactgaatggccgcaggcagctgctaactgtgcg
atatttggtggaaagctggccagcatcggagatccttctgagcaagcattcattaaaagc
aatgtggaagtacttaaagatagccacagctctttctggattggcctgtataaaacacac
aaaggagtatggaagtggctggataacacagtcttggactacattaactggagtccaggc
gactttgaaagggattatggagagattgcatctgatgatgggaagtggagttcaggtcgc
ggttggcatgacagagcatacatctgtgaaacacccaaagtgatgccaacagatgatgga
gcaaaacctgaacctcacagacaaaagggtgatggcagtcgtgcccatacaagtttgatt
gttgtgttgatcattgtgatcacttctacgctgatagtcactgcattcttcttctacaag
aagtctcctcgtcccttacccacctttgataatccactctacttcggcaacgaacgatcc
cagcctgatgtggttgacaccaataaactgatagagaaggcagaggaagaaaatcctgaa
cctattatatctctgtga
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integrated database retrieval system
