Scomber japonicus (chub mackerel): 128369173
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Entry
128369173 CDS
T09718
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128369173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128369173
03009 Ribosome biogenesis [BR:
sjo03009
]
128369173
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128369173
Spliceosome [BR:
sjo03041
]
Complex A
U1 snRNP components
U1 related factors
128369173
Complex B
128369173
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
Helicases
128369173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
128369173
NCBI-ProteinID:
XP_053186143
LinkDB
All DBs
Position
2:complement(26029534..26038311)
Genome browser
AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDATRRPLQEVEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVIDVIAKQNWTE
PTPIQAQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNNFGGSSYRDRDSDRGFGNGPKSAFGGNKAQNG
GSYGGNSGNSSGSYGNNYSNSNGQGNFGAPANQVGAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFSFTSQPPPPQGQQPPPPPPMVPYPMPPPFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcttttcagaccgagatcgaggcagagatagagggtatggtggaggacctcct
cgtttcggtggcggtggaggaggcaacaggggcggacctcccccaggaaagtttggcaac
cctggcgagaggctgcggaagaagcactggaaccttgacgagcttccaaagtttcaaaag
aacttctaccaggagcacccagatgccacccgcagaccacttcaagaggtcgagcagtat
cgaagaagcaaagaagttactgtgaaaggacgagattgccccaaaccaattgtaaaattt
cacgaggctgcatttccaagctacgtcatagatgtcattgccaaacagaactggactgaa
cccactccgattcaggctcaggggtggccagttgcactcagtggcaaagacatggttggc
atcgctcaaactgggtctgggaaaacccttgcataccttctgccagcaattgtgcacatc
caacatcaaccattcttggagcatggagatggacctatttgtttggtgttggcacccact
cgtgagctggcccagcaggtgcaacaagtggctgctgaatacggcagggcctcccgtctg
aagagcacctgcatctacggtggtgcacccaaaggacctcagattagggatcttgagagg
ggtgttgagatctgcatcgctacaccaggtcgtttaattgatttcctggagtgcggcaag
acaaatttgcgccgctgcacttacctggtgctggatgaagctgaccgcatgttggacatg
ggatttgaaccacagatccgcaagatcgttgaacaaatccggccagaccgtcagaccttg
atgtggagcgccacctggcccaaggaagtacgccagctggctgaggacttcctgaaggac
tacgtacagatcaacattggtgcactgcagctcagtgccaatcacaacatcctgcaaata
gttgatgtttgcaatgacatggagaaggaggacaaactcattcgtttactggaggagata
atgagcgaaaaggagaacaagaccattatttttgtggagaccaaaaggcgctgcgatgag
ctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagataagagc
cagcaggagagagactgggtccttaatgaattcagatatggcaaagctccaatcctcatc
gctacagatgtggcctcccgtggtttggatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccaccgcattggccgtacagcccgaagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgacttg
atctctgtgcttcgcgaggccaaccaggccattaacccaaagctgatccagatggcagag
gacagaggaggtcgtggaagggggggaagaggtggctacaaggacgaccgtcgggatagg
tattctggaggtgggaggagcaataattttggcggtagtagctacagggacagggacagt
gatagagggtttggcaatgggccaaagagtgcctttggtggcaacaaggcccaaaatggt
ggcagctatggaggcaacagcggtaactctagcggtagctatggcaacaattatagcaac
agcaacggacagggtaattttggtgctccagcaaatcaggtgggtgcctttggtaaccaa
agcttccagggcccccctcagttcggggccatgcagagggctgctcagaatggcatgaac
cacccgccgttctctttcacttctcagccaccaccaccacagggccaacagccaccaccc
ccgccaccaatggtgccctaccccatgccaccacctttccctcagtaa
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