Scomber japonicus (chub mackerel): 128369345
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Entry
128369345 CDS
T09718
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128369345
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sjo03310
]
128369345
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128369345
Nuclear receptors [BR:
sjo03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
128369345
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
RunxI
PA_decarbox
Motif
Other DBs
NCBI-GeneID:
128369345
NCBI-ProteinID:
XP_053186342
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All DBs
Position
12:15026847..15041006
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AA seq
498 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQKSQECVTSGGGGSTALSLP
REDGVCGGSGEDGEEGLSRSYSSGGSSSTLSDLDDIAALPDLFDLPLTPEEASEYCSLEL
LGGGASTGNTSNSSSSSSTSSSLSNQNSPQQTMLDGADSNGIHSHTHPLLAHTHALLDHL
PDDCSITDLEHITQSIVKSHLETCQYSAEDMKRFTWVQYAPEETRAFQNKSAEWMWQQCA
HHITNAIQYVVEFAKRIAGFMDLCQNDQIILLKAGCLEVLLIRMCRAFNVNNSTIFFNGK
FASAQFFKALGCDDLVSAVFDLGKGLCRLQLSDEEMALFSAAVLLSPDRPWLTEGQKVQK
LQEKVYLALQHSLHKSGASDEKLDKMVSKLPIMKSICNLHIDKLEFFRLVHPETAYSFPP
LYREVFGSEMSLPDSTDS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatcgaggtcatcccctgtaagatctgtggggacaagtcctcgggaatc
cactatggagttatcacctgtgaaggctgcaagggtttcttccgtcgcagccagcagaac
aatgccatgtactcttgttcccgccagaggaactgcctgatcgaccgaacaaaccgtaac
cgctgccagcactgtcgcctacagaagtgtctggctttaggcatgagcagagatgcggtg
aagttcggccgtatgtccaagaagcagcgtgacagcctgtacgctgaggtgcaaaagcac
cagaagtcccaggagtgtgtgacctctgggggcgggggctccactgctctatccttaccc
agggaggatggtgtctgtggtggtagtggggaggatggtgaagagggcctgagccggtcc
tacagcagcgggggctccagctccaccctcagtgacctcgatgacattgccgcactgcct
gacctatttgacctgccgctgacccccgaggaggccagcgagtactgtagcctagagtta
cttggcggaggggccagcactggaaacacctccaactcatcatcttcttcgtccacttcc
tcatccttgtccaatcaaaattcgccgcagcagactatgctggatggggcagacagcaat
ggaatccactctcacacacatccactgctggcacacacacatgcattgctggaccatcta
cctgatgactgctcaataacagaccttgagcacatcactcagagtattgttaaatcgcac
ctggagacgtgtcagtacagcgctgaagacatgaagagattcacttgggtacaatacgca
cctgaggaaacgcgtgcttttcagaacaagtcagctgagtggatgtggcagcagtgtgca
caccacattaccaatgccatccagtacgtggtggagtttgccaaacggattgctggcttt
atggacctatgccagaatgatcagattatactgctgaaagcaggctgtctggaggtcctg
ctgatacgtatgtgtcgagctttcaacgtcaacaacagcaccattttcttcaatggaaaa
ttcgcctcagctcagttcttcaaagcactaggttgtgacgacctggtcagcgcagttttt
gacctgggtaaagggctctgccgtctacagctgtctgatgaagagatggctctctttagc
gcagccgttcttctatcccctgatcgaccctggctgacagaaggccaaaaggttcagaaa
ctgcaggagaaagtctacctggctctgcagcatagcctacataagagcggtgcttctgac
gagaaactagataagatggtgtccaagcttcctataatgaagtctatctgtaacctccac
attgacaaactggagtttttccgtttggtccacccagagaccgcctacagtttccctcca
ctgtaccgggaagtgtttggcagcgagatgtctctgcccgactccaccgacagctag
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