Scomber japonicus (chub mackerel): 128369349 Help Entry 128369349         CDS       T09718                                  Symbol lig1 Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo03030   DNA replication sjo03410   Base excision repair sjo03420   Nucleotide excision repair sjo03430   Mismatch repair Brite KEGG Orthology (KO) [BR:sjo00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     128369349 (lig1)    03410 Base excision repair     128369349 (lig1)    03420 Nucleotide excision repair     128369349 (lig1)    03430 Mismatch repair     128369349 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:sjo03032]     128369349 (lig1)    03400 DNA repair and recombination proteins [BR:sjo03400]     128369349 (lig1) Enzymes [BR:sjo01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      128369349 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      128369349 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      128369349 (lig1) DNA replication proteins [BR:sjo03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     128369349 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      128369349 (lig1) DNA repair and recombination proteins [BR:sjo03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      128369349 (lig1)    NER (nucleotide excision repair)     Other NER factors      128369349 (lig1)    MMR (mismatch excision repair)     Other MMR factors      128369349 (lig1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  128369349 NCBI-ProteinID:  XP_053186347 LinkDB All DBs Position 12:25968009..26034489 Genome browser AA seq 1017 aa AA seqDB search MQRSIASFFQPKSKDKDIQKKAKDEPVKKPVKSPLKVQNGVQEADSPVKKVAKRSRQILD SDDDEEAPVVKEPVTTKGQGDKEAANKKEKDNVFKAVPTPLSPPPAPATPVTPATPATPA TPASSTSPGTPSTPNSISPTSGIVKRKTARKMFPKRKLDERTSGSESQKEESEAKEEKGQ QNKRPRVESSADTAGDAGEPMEVGAKEERVDKAVTEANSPDEEVENKKKKEGEKANKEER AERKSSDEKGKKAEGAEKKNEAKETTDDEKGPAISKEEVVEKDTREGEEKSPKSQTAKKQ KEAKEQKDKEPAKKAPISSFFAPRKAAVKTEKPEKDEAEKMMSTEKKSSAEESKDTKGES TSGQTDYDPSRSGYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSV LLLSPDDLLCCVYLCLNQLGPAYMGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDL GLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEA RYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEQK SLILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFD EAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVTCVLD SEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRR ALLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRS HNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTG FKDEDLEQHYKFLKEHILPKPRAYYRFDPSAEPDVWLDAMQVWEVKCADLSLSPIYKAAM GLADPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKVDPEDYY NT seq 3054 nt NT seq  +upstreamnt  +downstreamnt atgcagcggagcatcgcatccttctttcagccgaagagcaaggacaaagatattcagaag aaagccaaagatgaaccagtgaagaagcccgtcaaaagccctctgaaggtgcagaacggc gtccaggaagccgactcacccgtcaagaaggtcgccaagcgcagccgtcaaatcctggac agcgacgacgacgaggaagcaccggttgttaaggagccagtcaccaccaagggacaagga gacaaagaagccgccaataaaaaagaaaaggacaatgtgtttaaggcagttcccacccct ctgtctcctccacctgccccagccacccccgtaaccccagcaaccccagccactccagcc accccggcctcctcaacgtcaccagggacccccagcacccccaactccatctcccccacc tctggaatcgtcaaacgcaagacggcgaggaagatgttccccaagaggaagctggacgag cgcacgagcggcagcgaaagtcagaaagaggagtcggaggccaaggaggagaagggtcag caaaacaaacgaccccgtgtggagagcagcgctgacactgcgggggatgctggcgaacct atggaggtgggcgcaaaggaagaaagggttgataaggcagtgaccgaggctaacagccca gacgaggaggtggagaacaagaagaaaaaggaaggagagaaggccaacaaggaggagcgg gcagagagaaagagctctgatgagaaaggaaagaaagctgagggggcggaaaagaaaaat gaagcaaaggagacgacggatgatgaaaaagggcctgccatttccaaggaggaggtggtt gaaaaggacacgcgagagggagaagagaagagcccaaaaagtcaaacggcaaagaagcag aaagaagcgaaagagcagaaagataaggagccggccaagaaagcccccatcagcagtttc tttgctccccgaaaagctgcagtgaagacagagaaaccagaaaaggatgaagcagagaag atgatgagtacagagaagaaaagttcagcagaggagagcaaagatacaaaaggtgagtcc acttcaggacagacagactacgacccatccaggtccggctaccatcctgtggaccacgcc tgttggaagcagggccagaaagtgccgtacttggcggtggctcgcacctttgagaagatt gaagaggactctggcagactgagaaacatcgagacgctgtcgaatcttttccgctccgtg ctgctgctctcaccagacgacctgctgtgctgcgtgtacctgtgtttgaaccagctgggt cctgcttacatggggatggagctcggtgttggagagacagtgctgatgaaagctgttgct caagcaactgggcgacaattggacaaaatcaaggcagaggcgcaagagaaaggagatttg ggcctagtggctgagagttcccgtagcaaccagcggatgatgttccaaccggccagtctg acagcggggggtgtgttcaggaaattgaaggaaattgccagcatgagtgggaactcggcc atgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttccgaggcc cgctatatagtcaggtccctggctgggaagctgaggataggcctggctgagcagagtgtc ctttcagcattaagccaagccgtgtgcctcacaccacctggacaaggtttccctcccgct gtgatcgatgcagggaaggggatgagcgctgagagcaggcgggcttggatcgaacaaaag agtctcattctcaaacagacttactgcgagatgcccaattacgatgtccttatccccgtt ctgctaaaagagggcatagaccagctgcccaatcactgcaagctcactccaggcgtacca ctgagacctatgctggctcaccccaccaagggggtcggagaggtgatgaagaggtttgac gaggcggcgttcacctgcgagtacaaatatgatggagagcgtgcacagattcacattctg gagaacggcgaggttagaatattcagccgcaaccaggaagacaacaccagcaaatacccc gatatcatctctcgcattcccaaggtgaagaaggactcagtggtaacctgcgtcctggac tctgaggcggtggcctgggatcgtgagaagaaacagatccagcccttccaggtcctcacc acccgtaagaggaaggatgtggatgcctcggagatcaaagtccaagtgtgcgtgtacgcc tttgacctcctctatctgaacggcgagtccctggttcgacagccgctgtgtcggcgtcgg gctctgctgaaagaaagcttctcagaggtggagggagagtttgtgttcgcccgatccatc gactccgacaacaccgacgccatcgctgagttcctggagcagtctgtccgagactcctgt gaaggcctgatggtaaagactctggagaaggatgccacctatgaaattgccaagcgctct cataactggcttaagctgaaaaaggattacctggatggtgtgggcgacacagtggaccta tgtgtgattggcgcctacctgggtaaaggcaagaggacgggaacatacggaggcttcctg ctggcctgttacgacgaggagaatgaggagttccagtccgtctgcaagatcgggacaggc ttcaaggatgaagatctggagcagcattacaagttcttaaaggagcacatcttgccaaag ccacgcgcctactaccgcttcgacccatcagcagagcccgacgtttggctcgacgccatg caggtgtgggaggtgaagtgcgccgacctgtcgttgtcgccgatctacaaagctgccatg ggactggcggatccagaaaagggtatttctctgagattcccacgtttccttcggatcaga gacgacaagaagcccgaagacgccacaaccggagctcagattgctgatttgtacaagaag cagcagcagattcagaatcagggagagaaagttgacccagaggactactactga

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