KEGG   Scomber japonicus (chub mackerel): 128369635
Entry
128369635         CDS       T09718                                 
Name
(RefSeq) collagen alpha-1(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo04382  Cornified envelope formation
sjo04510  Focal adhesion
sjo04512  ECM-receptor interaction
sjo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128369635
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    128369635
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    128369635
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    128369635
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128369635
   00536 Glycosaminoglycan binding proteins [BR:sjo00536]
    128369635
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   128369635
Glycosaminoglycan binding proteins [BR:sjo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128369635
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 128369635
NCBI-ProteinID: XP_053186688
LinkDB
Position
12:16965968..16993418
AA seq 1591 aa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NT seq 4776 nt   +upstreamnt  +downstreamnt
atggaaaggacagtgtttgtagttcttctgatactgtttgctgtgatactgatgggcact
ggggccaaaaattgtgtgtgcaatggaagatcaaggtgccgctgtgagggagtgaaaggc
agcaggggggaaaggggagttcgaggtgctataggtcccctagggatagagggtcgccga
ggacctgatggtgatcctgggcctatgggaccaaagggaaacactgggccaaatggacct
gagggcccaaaaggcgatccgggaccaaaaggcaaagaaggatttgctgggtctcatggt
ttaccgggtatcccaggtttacaagggccaccaggcttcccaggggccccaggctgtaat
ggaacagatggagaggagggacttcctggtattcctgggctccatggtattgatggatta
cctggttcagatggtctacctggacaacagggagctctaggtttgcctggaatacctgga
ctacatggagaccaaggaccacagggtaataacggtcaagaaggcacacgaggtatgcct
gcaccctctggtctgaaggggcggagaggaccacgtggcccacctgggccaccgggtcac
attaagttgtttttctctgaggatcccataagacagggagatcctggttatggcgattac
acgaaaggaacaaagggagacaaaggacaggagggtccagaaggaaagccaggggaggat
ggcgatcctggtcaaaagggattattgggtgaaaaggggaataggggcccccctggtcta
cctggaaatgtgagttttatcataacgactgaaccactaaaaggataccgtggagatcct
ggtcgtccaggaatacctgggtttactgggaatgaaggtgttgtggggtttcctggagct
cctggaccccgaggacaggcatctgggaattatgtgccaggtccacatggtcccaaaggc
tttccaggcctgacaggggaacctggggagccaggggatatgtctattggacaaacaggc
ctaaaaggggatcgtggtgatcatggacctcctggggacccaggcccacctggacgttgt
gacgacagacctaacattgccaagggtcaaccagaaataaacaagggtgatcctggactg
aagggcacactgggaatgcaaggacagaagggggatatctgttactcgtgttccgtatca
ggaccaccagggccccatggtccacctggcatccctggaaataatcaaggaccaggagca
aaaggtgatcctggcttcccaggacttatagggccatctggaataccaggttctattggc
acaagaggatttccaggcctccctggacaaaaaggagaatcatattcctacaacagccct
gtgataaagggagagaaaggagacccaggacagcctggcaggcctggtgtagatggccat
tatggggctcctgggttaccaggtcacaaaggacttgttggtttgccaggtctgccaggg
cctcaaggacccattggctaccctgggccagtgggacacgggtttcctggatttccaggt
agtcagggagatactggggtaccgggcttgcctggactgcctggatttccaggccagaaa
ggggaacccagccacacccgtgtaaaaggagatcctggcattaaaggtcagcctggttta
cctggaaacccaggtcaactaggtagcccaggtttcgctggaaatccaggttatccaggg
cagaaaggagaaaaaggtgacccaataggcccaggcccaacaggacagaaaggtgacaag
gggcagccaggtcgcccaggcactgtgggtatcggcctgcctggtcagccaggtcgacaa
ggccctcctggttctccaggacagaagggtgatggtggctctggataccctggacttcca
ggccttaaagggtctaaaggtgaagatggagctcagggacttgtaggagatcctggatac
actggttcacctgggatccatggcttaccaggcattagtggtttaaaaggagaaaaagac
ttccatagctgtgctagattcccagcttctcctacctcaggctctcagtgtagagacctg
aggtcaacctaccgctactcccatgctcctattttactgctgactgaagtaaaggatccg
gtgggcccccaggaccatctggatataaaggtctatgtatacctggtccacctggtccac
ctggcccacctggaccacatggtcttccaggacttcgaggttagtgtacacagaagatct
aatggtctgaaaggaaacccaggttatcctgggtttggtatttctggccctactggtgag
cctggtccacttggtgcaccaggtggactaggttcacaagggcatcctggacaaaaaggg
atcaagggagaacatggccagtgtggtaaaaaaggagtcaaaggagaccctggaccagac
ggtaaaccaggatatgggctaataggattgcctgggatgataggaccaccaggccaaaga
ggtgaccctggccgtgatggaatcaaaggacacaagggcagcctaggcatacctggggac
gaaggtgtcatgggtcctccaggcccttcatcaccaggatgtattgggccccggggggac
ccaggagatcagggtccacctggtccaaccggtcgctgtggaaatcctggaagtcctgga
ttcaaagggcaaagagggaacaacggacaactagggcaacctggacaaggaggtccacca
ggtgacccaggtactcatggatcaaaaggaaataaagggcctgctggtgcagcgggagac
ccaggaatcagaggccctccaggcctgaatggaataaaaggagatcaaggaatccctgga
gtgcaaggtccagatggtgtaccaggttcaactggtcccaaaggatttaagggagagcca
agcatctgtggcacacctggaccaacaggacaaaagggtgatccaggattaaagggtact
ggtggaattaagggtcaaaaaggagaacctggcttttttggccaaccaggtccacctgga
aaccatggagacaaaggaaatccaggacctgatggaccaaatggttcaccaggctatgaa
ggacctaaaggttcagatgggccccaaggaagcaaaggccgcctaggacctaatggacaa
caaggttccccagggccgccaggtgtccctggttatttgggtcctaaaggtgaccagggc
catgatgggattcctggaccaccagggccaaaaggagacactattacaatcaaaggaaag
cctggtgttgctggttacccaggtcagccaggtcagcccgggaatcctggtgatcctggc
tcgcctggcccagcaagtactggaccaataggagacagaggacatccaggtccatccggg
gatcctggtcagaaaggacctaaaggaagtgaaggagcatgtgttcctggatcaaaagga
gaccgtggccgtcctggcagtactggtagcccaggcaatcctggcttacctggtcctcca
ggttgcaaatataagttgttgaaaggagacaaaggggacccaggtcaccaaggaagccta
ggccatagaggacccataggagatccagggcctccaggaacatcttgtggcgcaccagga
ccaaaaggaccaaaaggtgaccctggtcatcctggaagccatggggcctttggctaccct
ggtgacattggcatgcctggtctgcctggtctgcctggaaacaaaggtttacctggacga
cctggtcccagtggaaaaccagacgttagatatgtaccaggacctcctggctggattggt
cctcctggcaatccaggacccccaggatcctctggcccacaaggaccttgcggccgtcga
ggccggccaggtatcaaaggaatttgtggttccgtgggtccagtccagcccggatttact
ggccaaaaaggaaacaaaggaacatcaggactgtcaggtttaccaggtgaaaatggactt
ccaggcaggaagggtcctccagggttaccaggaccaagtgcatgttcaggtcaagttgac
agtttcctgatagcccgacacagtcagagcattaaaatccctgactgccctccaggcact
aacttgatctactctggttactccttactctacattaatggaaatgaaagagctcatggg
caggaccttggctccatgggaagttgtctttctcgtttctccaccatgcccttccttttc
tgtgatacggaaagtaactgtcgctatgcttctcgcaacgactactcctactggttgtcc
actgacaaacctatgcctcccaccatggttcccatcacaggagatgagctggcctcttac
atcagcaggtgctcagtgtgtgatgttccctccaatatcatagccgtccacagccagaca
actaaagtaccagaatgtccacaaaactgggagtcactctggtctggatactcatttgtc
atgcaaacaggtgctggtgcagagggttcctcccagcagctagtttctcctggctcatgt
cttgaacatttccgccaagtgcccttcatcgagtgtcatggcaggggaacatgtaactac
tacccagattcctatagctactggctggcgtccattaaccacaaaaacatgttcagtaaa
cctcttcctcagacagtgaagggaaactctctgcaaaatgtcatcggtcgatgtcgggtc
tgcaggaaaggtgtcagacgtggagactgtctttaa

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