Scomber japonicus (chub mackerel): 128369958
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Entry
128369958 CDS
T09718
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128369958 (pdcd11)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
90S particles
Other 90S particles
128369958 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_N
HAT_PRP39_C
Spt6_S1
HAT_Syf1_CNRKL1_N
Suf
TPR_14
OB_RRP5_4th
TPR_19
HAT_Syf1_CNRKL1_C
UTP6_C
TPR_16
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
ARM_TT21
PCB_OB
PPR
Wzy_C_2
Motif
Other DBs
NCBI-GeneID:
128369958
NCBI-ProteinID:
XP_053186906
LinkDB
All DBs
Position
2:30323295..30336153
Genome browser
AA seq
1816 aa
AA seq
DB search
MASVEEDFPRGGTTNKKPTESKIVTLRTEVDNLFQPSEQPEAKKRKGASKDDSKKFKKPK
TVKEKGDGLTLNTAAKCVEILHAKNVKEGMLLLGCVKEVADFEVTVSLPCGLHGFLSIKN
ICDSYTKLLSQQLDSVDTEEIYSLPHFFYPGMVFRCVVAKLDEAKGGSISIQLSVNPKLV
NKALTSSSLKAGMVLTGCVESVEDHGYITDIGVSGTKAFLPKKAVTDKQSKPEELKVGQY
VTCQLEEVKNDGRMVRLSFCPPTIAQPCAEPQQGWNLTNLLPGLQVKATIKKVTKHGLLL
DFLSSFSGQVDFLHMDPEQASSYTEGGEVRACLLYVEPSTRLVGLSLRSYLVQPGSRVEP
SPACGERIGEVVKGCKLTSMHHMSGAMLELPDKTRAFVHRNHLKESNEPVNDNKVQAIPE
HTCRILDFSPIDQVHFVSLRKSVINKPFFRYHDLQPGQIVEGTVAVLLTQGMVVHLSGHI
KGLVPRTHLSDIVLKNPEKKYMEGMKVKCRVLSVDPENKKLYLTRKKALIESSLPLFLSY
DDARPGRVSHGYIVCVKHFGCIVRFYNSVKGLVPLGELSSEPIANPEDVFYVGQVLKAKV
IHCDTEKAKMVLTFRDAVAKDTEKIPKPQIDCEVGKKLEAKVLKKVLNGLEVAILPEEIR
ATLPTMHLSDHMSNCTMLWESLHEGDTISDLVCFNKNKTRITLTKKPTVRWSLEEGVVAK
EFSEITVGMQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFLSDTTIAFQMGQTVIA
KVTNLDEEKKRFLVTLKMSEVISPGGDAQTRLIRGLQERRAVTEMLATRDNSELLEQLAA
LSIGQKLKLTVDTVKKSGAVFKSDDLIGATIMATKHHVMGVSLTSGQKVTAVVLLVDILS
TSVHVSILSKLVGKKKSLNEESKYTAILQHIDRDFATISLDDTAQLTMIETRSHLNETFL
SESEKLRAGMYLAVEVIEPSCEELQGLPLVSWKRTAPKRQRTISENQSSSKGHCFGDILQ
AKVRSVKPTCIQVMLEDGSIGSVHVSEVVEAKEVRQGSFPTSSVKVGSVVTARVIGGREA
TSHRFLPFSHPKFTYTIPELTLIPSKLNQDADFKAVTAKEKLSSYKVGEDITCFVSKFNP
ERKCLEVTTDPCVTATVELLAMITDPKDASHPEKLYKLGQVVHAKVVEVSSKPQRLALSV
TGSHKLEKDSVTLGMVTSIQPQVGLLVKLPFGGMGAVAVTDLADAYRPNPLEMYSKDQLL
RCYLLGNENGKWQLSLRPSRLNPQAKAVKDAEVSSVQELKTGQIIRGYVKSVGERGVFIK
LSTSITGRAELQQSSKYFVANHKVLSEHLLPNTLLTTKILSIDKKEEFVNLSLLPADTGK
PDVLPESLGLPLRLIGEEKKKHDATKKKKRTLSESEEKQEESQVPKKKKKKKTKTEDNDS
GVEVYFREEEDKEDEEEPKPKSTKQVTPSSAGPSRLQVAAGFSWDMGLNSLKPASADKDP
DSSDGEDQEGGSKAQKKSRHELEQEKKAAEKALLQRETELMDPNLRPQDTVAFERLLLAS
PNSSLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEE
SLKKVFERALQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNKAVWLSYGTFL
LQQGESDAASALLQRALKSLPSKESVDVIAKFAQLEFRYGNAEKGRTMFDKVLTSYPKRT
DLWSVFIDLMVKHGAQKDVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQAVK
EKAMEFVEAKGTEAAN
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtggaagaggacttccctcgaggagggacaaccaacaagaagcccactgag
agtaaaatagtgactctacggactgaagtggacaacctgttccagccaagtgaacaacct
gaagctaagaaaaggaagggagcgtccaaagatgacagcaagaaattcaagaagccaaag
accgttaaagagaaaggagatggtctgaccctcaacactgcagccaagtgtgtggaaatt
ctacatgctaagaatgtgaaggagggcatgctcctgctgggctgtgtgaaggaggtagca
gactttgaggtgacagtcagtttgccttgtggcctgcacggcttcctcagcatcaagaac
atctgtgactcgtacaccaagctgctcagccaacagctggattcggtcgacacagaggag
atttactctctgccacacttcttctatcctggcatggtgttcaggtgtgtggttgccaag
ttggatgaagcaaagggaggctctattagcatccagctgtcggtcaacccaaagctggtc
aacaaggctctcacttcaagctctctgaaagctggcatggtcttgactggatgtgtggag
agtgtagaggatcatggctacatcactgacattggcgtaagcggaactaaagccttcctg
cccaagaaagcagtgacagataaacaaagcaaacctgaagaactgaaagtgggccagtat
gtgacttgtcaattagaagaagtgaagaatgatggacgcatggtccggctttctttctgt
cccccgaccatcgcccagccctgtgctgaaccccagcagggctggaaccttactaacctc
ctgcctggtcttcaagtcaaagctacaatcaaaaaggtcaccaaacacggtctgctccta
gacttcctgtcctcgtttagtggccaggtggacttcctccacatggatccagaacaggca
tccagctacactgagggaggcgaggtgcgagcctgcttattgtatgtggagccatccacc
cgtctggtgggtctgagcctgcgcagctacctcgttcagcccggcagcagagttgaaccc
tcccctgcttgcggcgaacgtatcggtgaggtggtgaaaggctgcaagttgacctctatg
caccacatgtctggagccatgttggaactgcctgacaaaacacgggccttcgttcacagg
aaccacctgaaggagtctaacgagccagttaatgacaacaaagtgcaggccatacctgag
cacacctgcaggatcttggacttcagccccattgaccaagttcattttgttagtctgcgc
aagagcgtgataaacaagcctttctttagataccacgatcttcagcctggtcagattgta
gagggtacagtggcagttctgctgactcaggggatggtggtgcatttgtccggccacatt
aaaggcctggtgccccggacccacctgtccgacatcgtcctaaagaaccctgagaagaag
tacatggagggcatgaaggtcaaatgtcgggtgctgtctgtagatcctgagaacaagaag
ctgtacctgaccagaaagaaagccctgatcgaaagctccctgccgttgttcctcagctac
gacgacgcccgtcccggccgcgtttcccacggctacatcgtctgcgtcaaacactttggc
tgcatcgtccgtttctacaacagcgtcaagggcctggtgccactcggcgagctcagctct
gagccaatcgccaatcctgaggatgtcttctacgtcggtcaggtcttaaaggccaaagta
attcattgcgacacagagaaggcaaagatggtgctgacgtttagggatgcagtggcaaaa
gacactgagaaaattcccaagccccagattgactgtgaggtgggaaagaagctggaggcc
aaagtgctgaaaaaggtacttaacggtctggaggtggcgatcctccccgaagagatccgt
gcaacactacctaccatgcacctctcggatcacatgtctaactgcactatgctgtgggag
agcctgcatgagggagacaccatctctgatctagtctgcttcaacaagaacaaaacgagg
attactctcaccaagaaaccaacagtgagatggtcactggaggaaggagtggtggccaag
gagttctcagagatcacagttggaatgcagctgatcggctggatcaagaacatcatgtcc
tatggcgtttttgtagagttcccatacggccttgttggtctcgcacccaagtcggccatg
acggacaagttcctcagtgacacaacaatcgccttccaaatgggccagacagtcattgct
aaggtgaccaaccttgatgaggagaagaagagattcctggtcacactgaagatgtctgag
gtcataagcccagggggggacgcccagaccagactcattagaggcctgcaggagagaaga
gctgtgactgaaatgttggctacgagagataacagcgagctcctcgagcagctggctgct
ctgtctatcggccagaagctgaagctgactgtggacactgtgaagaagagtggtgctgtt
tttaagtccgatgacttgattggtgccactataatggccaccaagcaccatgtcatgggt
gttagcttgacctcaggacagaaagtgactgcagttgtccttcttgttgacatcctgtcc
acttctgtccacgtctccatcctttccaaactggtgggaaaaaagaaatctttaaatgaa
gagtcaaagtacacagcgatactgcagcacatcgacagagactttgccaccatctcacta
gatgacacggctcagctgaccatgatcgagacaaggagccacctgaacgagacattcctg
tctgagtcagagaagctgagggcggggatgtatttggccgtggaggtcatagaacccagc
tgcgaggaactgcaggggctccccctcgtgtcctggaagcgcaccgcaccaaaacgacag
cgcacaatctcagaaaaccagagcagctccaagggtcactgctttggcgacatcctgcag
gctaaagtgcggtcagtgaagcctacctgcattcaagtcatgctagaagacggaagcatc
ggcagcgtgcacgtgtctgaggtggtggaggctaaggaggtgcgtcagggatccttcccc
acatcttcggttaaagtgggtagcgtggtcacggccagggtcatcggagggcgagaggcc
accagtcacagattcttgcccttctcccatcctaagtttacatacaccattcctgagctc
acacttatacccagcaaactgaaccaggatgcagatttcaaagcagttacagcaaaagaa
aagctgagcagctataaggtcggcgaggacattacatgctttgtatcaaagtttaatcca
gagaggaagtgtttggaggtcaccactgatccatgtgttactgcaacagttgaacttctg
gccatgatcactgaccctaaagatgccagccacccggagaaactgtacaagcttggccaa
gttgtccacgccaaagtggtggaagtgagctccaaacctcagcgccttgcactgtcagtc
acaggttcccataaactggagaaagacagtgtgactttggggatggtgacgagcatacag
ccacaagtcggcctcctggtcaagcttccctttggtggcatgggggctgttgccgtcact
gacctggctgatgcttacaggccaaatccgttggagatgtacagcaaggatcagctgctc
aggtgttaccttctgggaaatgaaaatggaaagtggcagttgtccctacgtccatcaagg
ctgaacccgcaggccaaggcagtgaaagacgcagaagtttcatctgtacaagaactgaag
acaggccagatcatcagaggctacgtcaagtctgtaggagagcgaggagtgttcatcaag
ttgtcgacgagcatcacagggagagccgagcttcagcagtcctccaagtattttgttgcc
aaccacaaggtcctttctgagcacctgcttccaaacaccctgctcaccacaaagatccta
agtattgacaaaaaggaggagtttgtcaacctctcccttctccccgcggacaccgggaag
ccagacgtcctcccagagtctctgggtctgccgctgcgtctgatcggagaggagaagaag
aaacacgacgccacaaagaaaaagaagcgcactctgtccgagagtgaggagaaacaagaa
gaatcccaggtcccgaagaaaaagaagaagaagaaaacaaagactgaggacaatgacagt
ggagtggaggtgtactttagggaagaggaggataaagaggatgaagaagagcccaaaccc
aagtctacaaaacaggtgacgcccagctcagcaggtccatccagactgcaggtggcagca
ggtttctcctgggacatgggactgaactccctgaagcctgcctctgcagataaagatcca
gactccagcgacggagaagaccaagagggaggtagcaaggcccagaaaaagtctcggcac
gagctggagcaggagaaaaaggcagcagagaaggccctgttgcagcgggagaccgagctg
atggaccccaacctgaggccccaggacactgttgccttcgagcgcctgctcctcgcctcg
cccaacagctcgctcctttggctccagtacatggctcaccatctgcaggccacccagatc
gagcaggcccgagctgtggccgagagggcgcttaaaactatttccttcagagaggagcag
gagaagctgaatgtgtgggtggccctgctcaacctggagaacatgtacggcacagaggag
agtctcaagaaagtgtttgagcgggcactgcagttctgtgagcccatgcccgtctaccag
cagctggctgacatctacgcaaagtctgacaagactaaggaggcagagggcctgtataag
acgatggtgaagcgtttccgtcagaataaggcggtgtggctgagctatggcaccttcctg
ctccagcagggtgagagcgacgctgctagtgctctcctgcagagggcgctgaagagtctg
ccctccaaagaaagtgtggatgtgattgcaaagttcgcacagctggagttccgttacggc
aatgcagagaaaggtcgcaccatgtttgacaaagtcctgacaagctacccgaaacgcaca
gacctctggtccgtcttcattgacctcatggtcaaacacggggcacagaaggacgtcagg
gcgctgtttgatcgtgtgatccacctcagtgtttctgtgaagaagatcaagttcttcttc
aagcgctatctggagtatgagaagaagcatggcaccccacagagcatccaggcagtcaaa
gagaaggccatggagtttgtggaagccaaaggcacagaggctgccaattaa
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