Scomber japonicus (chub mackerel): 128370471
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Entry
128370471 CDS
T09718
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128370471 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128370471 (exosc1)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
128370471 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
128370471 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
128370471
NCBI-ProteinID:
XP_053186944
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Position
2:29323072..29327772
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AA seq
194 aa
AA seq
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MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMIPISWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaaactatgcagtgtagaagactgtata
cccggcacaggagtgtacctgcggcacggctacatatactcctcactagcaggctacgtg
ctgaggaaaaacgagggagaggagttaccagtaatctcagtggtgagggaaacagaagca
caactactaccagatgttggagcaatagtcacctgtaaggtgaccagcatcaacccaagg
ttcgccaaggtccacatcctttatgtaggctccacgccgctcaaggaccgcttcagaggc
accatcagaaaagaagatgtacgagcgacagagaaagacaaggtggagacctacaaaagt
ttcagaccaggtgacatcgtcctagcaaaagtgatctctctcggtgatgtgcagtcgaac
tacctgttgactacagcagagaatgaactgggggtggtggtggcacacagtgaagcaggt
gcccagatgatccccatcagctggtgtgagatgcagtgtcctcgaacacattccaaagag
ttccgcaaagtggcacgagtgcagccggagtatctacaggcatga
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