KEGG   Scomber japonicus (chub mackerel): 128370471
Entry
128370471         CDS       T09718                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    128370471 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sjo03019]
    128370471 (exosc1)
Messenger RNA biogenesis [BR:sjo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     128370471 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     128370471 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 128370471
NCBI-ProteinID: XP_053186944
LinkDB
Position
2:29323072..29327772
AA seq 194 aa
MSPMKLCVPGDKLCSVEDCIPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMIPISWCEMQCPRTHSKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaaactatgcagtgtagaagactgtata
cccggcacaggagtgtacctgcggcacggctacatatactcctcactagcaggctacgtg
ctgaggaaaaacgagggagaggagttaccagtaatctcagtggtgagggaaacagaagca
caactactaccagatgttggagcaatagtcacctgtaaggtgaccagcatcaacccaagg
ttcgccaaggtccacatcctttatgtaggctccacgccgctcaaggaccgcttcagaggc
accatcagaaaagaagatgtacgagcgacagagaaagacaaggtggagacctacaaaagt
ttcagaccaggtgacatcgtcctagcaaaagtgatctctctcggtgatgtgcagtcgaac
tacctgttgactacagcagagaatgaactgggggtggtggtggcacacagtgaagcaggt
gcccagatgatccccatcagctggtgtgagatgcagtgtcctcgaacacattccaaagag
ttccgcaaagtggcacgagtgcagccggagtatctacaggcatga

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