Scomber japonicus (chub mackerel): 128370744
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Entry
128370744 CDS
T09718
Name
(RefSeq) transcription factor Sox-10-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128370744
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128370744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128370744
NCBI-ProteinID:
XP_053186962
LinkDB
All DBs
Position
2:23175719..23178478
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AA seq
498 aa
AA seq
DB search
MSGEEHSLSEAELSPGGSDDGHSLSPSQPGAPPGQDSPLTGPPPQLTALCVADGRGDDRS
RGKSDEEDDRFPIGIREAVSQVLDGYDWTLVPMPVRVNNGNKAKPHVKRPMNAFMVWAQA
ARRKLADQYPHLHNAELSKTLGKLWRLLNENDKRPFIEEAERLRKQHKKDYPEYKYQPRR
RKNGKLTNAGESDSQGEGEASHSQSHYKTLHLEHNGGAGSPLGDLHHHHHHHHHPAGQGH
SPPTPPTTPKTELQSGKLSDGKREGAAGAAGGSGGSRGALGVGAEGASGGPSSSSAKPHI
DFGTMDIGEISHEVMSNIEPFDVNEFDQYLPPNGHPQSAAGAPTAGSSASSYAYALAAAS
GHSAWLSKQQQQPQASPSSSDPSKAQIKSESASGSHYVEASSSPSSGTHVTYTPLSLPHY
GSAFPSLASRAQFEYGEHQAPGAYYAHSSQAPGLYSAFSYMGPTQRPLYTTIGDPSSVAP
SHSPTHWEQPVYTTLTRP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgaggagcacagcctgtccgaggcggagctgagtcccggtgggtcagatgat
ggtcactcactgtctccgtctcaacccggagcgccacccggccaggactcacctctgacc
ggaccgccgccgcagctgaccgctctgtgtgtcgcggatggcaggggggatgacagatcc
agaggcaaatcagacgaagaggacgatcgctttcccatcggcatcagggaggcggtcagt
caggtgctcgatggatatgactggactcttgtgcctatgccggtgcgcgtaaacaacgga
aacaaagcgaagccccacgtcaaacggcctatgaacgccttcatggtgtgggcacaagcg
gcgaggaggaaactggccgaccagtacccccacctgcacaacgcggagctgagcaagacc
ctgggcaaactgtggaggctactgaacgagaacgacaagaggccattcatcgaggaggcg
gagaggctgaggaaacagcacaagaaggactacccggagtacaagtaccagccccggaga
cgcaaaaacggcaaactaacgaatgctggtgagtctgatagccagggggaaggggaggcc
agccactcccagtcacattacaagaccctgcatttggagcacaacggtggggctgggtct
cccctgggtgacctgcaccaccaccaccatcaccaccatcatcctgctggtcagggtcac
agcccgcccacgccccccaccaccccaaagacagagctccagtctgggaagctgtcagat
ggaaagagggagggggcagcaggagcagccggaggatcaggggggtcaaggggagcactt
ggggtgggagctgaaggtgcatccggtggtccctcgtcatcaagcgctaaaccccacatc
gactttggcacaatggacatcggtgagatcagccacgaagtgatgtctaacattgagcca
tttgatgtgaatgagtttgaccagtaccttcctccaaacggccacccgcagagtgcggct
ggggcccctacagctggatcttcggcctcgtcttacgcctatgccttggctgctgcaagc
gggcactctgcctggctctccaaacagcagcagcagcctcaggcctctccgtcttcctct
gacccttccaaagcccagatcaagagtgagtctgcatctgggagccactatgtcgaggcc
tcgtcctctccctcctcaggcacccatgtcacctacaccccgctcagcctccctcactac
ggctctgctttcccctcgctggcctccagggctcagtttgagtatggagagcaccaggcc
cccggggcgtactatgcccactccagccaggccccggggctgtactcagccttctcctac
atgggccctacacagaggcctctgtacactaccataggagacccctccagcgtggccccc
tctcacagccccacacactgggagcagcctgtttacaccacactcacaagaccttga
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