Scomber japonicus (chub mackerel): 128370911
Help
Entry
128370911 CDS
T09718
Symbol
lrrtm1
Name
(RefSeq) leucine-rich repeat transmembrane neuronal protein 1
KO
K16665
leucine-rich repeat transmembrane neuronal protein 1/2
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
128370911 (lrrtm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_5
LRR_9
LRR_14
LRR_NXF1-5
LRR_LRWD1
LRR_EndoS
LRRNT
DUF4750
HemY_N
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
128370911
NCBI-ProteinID:
XP_053187073
LinkDB
All DBs
Position
2:19597031..19598605
Genome browser
AA seq
524 aa
AA seq
DB search
MLMDFLLIGLYLKWPLKKPPGLILCSLGIFLRTVPLVEGVCPRLCRCDSKLLYCEGLNLT
DIPRNLSSAMGLSMRENNLTELREGQLAGLSQLTWLYLDHNNIDIVEEGAFDRLRRVKEL
DLSSNRIESLPNGTFRPLPNLRILDLSYNRLQALEPDLFHGLRKLTNLHLRYNSLKFVPV
RIFQDCRSMQFLDLGYNQLQSLARNSFAGLFKLTELHLEHNELVKVNLAHFPRLISLRTL
YMHNNRATIVVNTLDWTWHFLEKIDLSANEIEYIEPHVFESAPNLKVLMLDSNRLTSMDQ
RILDSWSSLDSITLAGNDWECNRNVCALASWLSAFRGQRDNSLLCSSPDTAQGEDVLDAV
YAFQLCEDHPLEVTTAGLYASTRDLAQGGSVLGPFTPNPYEGEGSEVVTSSFTVTVGHED
LESTMQIHKVVTGTMALIFSFLIVVLMLYVAWKCFPAGIRQLRQCFSSQRRKQKQKQSMQ
QMAAISTPEYYVDYKPNHIEGALVIINEYGSCTCQQQPSRECEV
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgctaatggatttccttctaattggactgtacttaaagtggccactgaagaagcccccg
gggttgatactgtgttcattgggcatttttctcagaacagttcccttggtagagggggtt
tgtccaaggctgtgccgctgcgacagcaagctgctgtactgcgaggggctcaacctcaca
gacattccccgcaatctgagcagtgccatgggcctgtccatgagagagaacaacttgacc
gagctgcgtgaaggccaactggctggtctgtcacagctcacctggctctacctagatcac
aacaacattgacattgtagaggagggtgcatttgacaggctaagacgggtcaaggagtta
gacctgagcagcaaccgaattgagagtctgccaaatggtacctttaggcccctcccaaac
ctgcgtattctggatctctcatacaacaggctgcaggcacttgagcccgacctattccac
ggccttagaaagctcaccaatttgcatttgcgctacaattctctcaaatttgtgccagtg
cggatttttcaagattgccggagcatgcagtttctggacttgggatacaaccaactacaa
agcctggcacgaaactcctttgctggcctcttcaagttgactgagttgcatcttgagcac
aatgagctggttaaagtcaacctagcccacttcccccgtctcatctctttacgcactctg
tacatgcacaacaatcgtgccactattgttgtcaataccctggactggacatggcatttt
ttagagaagattgacctgtcagccaatgaaatcgagtacattgagccacatgtttttgag
agtgcacccaacctcaaggtgctgatgctagactccaatcggctgacttctatggaccaa
cgtattctggattcatggtcatcgctggacagcattaccctggcagggaatgactgggag
tgcaaccgcaacgtgtgtgccttggcttcttggctgagtgccttccgaggccagcgtgat
aattccctgctgtgttcaagcccagacacagcacagggtgaggatgtgttggatgcagtc
tatgcttttcagctatgtgaggatcatccactggaggtaactacagcaggcctgtatgcc
tctacaagggatctggcccaaggtggctctgtgttaggcccatttactcccaacccttat
gaaggtgagggtagtgaggtggtcaccagttctttcactgtcacagtgggccatgaagac
ctggagagcaccatgcagatccacaaggtggtgactggcaccatggcacttatcttttcc
tttctaattgttgtgctcatgctgtatgtggcatggaagtgctttcctgccggaataaga
caactgaggcagtgctttagcagtcagcgccgtaagcagaagcaaaagcaaagcatgcag
cagatggctgcaatttctacaccagagtactatgttgactataaacctaaccacattgag
ggagctctggtaatcatcaatgaatatggttcttgcacttgccaacagcaaccttctcgg
gaatgtgaggtgtga
DBGET
integrated database retrieval system
