Scomber japonicus (chub mackerel): 128370928
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Entry
128370928 CDS
T09718
Symbol
chrne
Name
(RefSeq) acetylcholine receptor subunit epsilon
KO
K04817
nicotinic acetylcholine receptor epsilon
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128370928 (chrne)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128370928 (chrne)
Ion channels [BR:
sjo04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
128370928 (chrne)
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
SLATT_5
Motif
Other DBs
NCBI-GeneID:
128370928
NCBI-ProteinID:
XP_053187087
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Position
13:complement(20294524..20303078)
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AA seq
518 aa
AA seq
DB search
MMATYSFGIFFGLITILGTLVVQVQCNEESQLIGDLFKSYNKNIRPVVHPEDKVVVQIKL
TLTNLISLNEKEETLTTNVWLEIQWVDYRLAWNTSQYYGISVIRVPCKTVWLPDIVLENN
IDGKFDVAYYANVLISNDGWIYWLPPAIYRSTCAIEITYFPFDYQNCTLAFRSQTYSANE
VELILAGVQENEPIEWVDIDPEAFTENGEWAIVHRPARKMINTRYSPDDLEFQEILFNLV
IQRKPLFYIINIILPCSLISSLVVLAYFLPAQAGGQKLTVSISVLLAQTVFLFLIAQKVP
ETSLSVPLIGKYLIFVMSVTTLIATNQIVVLNFSLRSPSTHTMSHTIKHMFLETVPRLLG
MSPLVDDNEETTEINGVRERRRSSFGLMQRAEEYVLKQPRSEMMFDKQRERHGLTRSIVD
NIDVSSTANLYKSLAQAAPEIKQCVDACNFIAESTRQQNNIGSEIESWVLIGKMIDKVCF
WAAISLFIIGTVGIFLTGHFNRAPEFPFPGQNKKYVPS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaacgtacagttttgggatatttttcggactcataactatacttgggactcta
gtggttcaggtgcagtgtaatgaggagtcacagctgatcggtgacttgttcaaaagctat
aacaagaatattcgcccagtggttcatcctgaagacaaggtcgtcgttcagatcaagctt
accctcactaaccttatctccctgaatgaaaaggaggagactcttacgaccaatgtgtgg
ctcgagattcaatgggttgattatcgccttgcctggaatacatctcagtattatggcatt
agtgtaatccgtgtcccctgcaaaactgtttggcttcctgatattgtccttgaaaacaac
attgatggcaagtttgatgtggcttattatgccaatgtgttgatcagcaatgatggttgg
atatactggctacctcctgccatctatcgcagcacttgtgccattgagatcacctatttc
ccatttgattatcaaaactgcacgctagcattcagatcccagacgtacagtgccaatgaa
gtggaactcatcttggctggtgtacaagaaaacgagcctattgaatgggtggacatcgac
cctgaggcttttacagagaatggcgagtgggccatcgtccaccgtccagccaggaaaatg
atcaacacaagatattctccagatgacctggagtttcaggagatcctgttcaatctggtc
attcagaggaaacccctcttctacatcatcaacatcatcctgccctgctccctcatctcg
tcactggttgtactggcctacttcctacccgcacaagctgggggacagaagttgactgtg
tccatctctgtcttgctggctcagactgtcttcctcttccttattgctcagaaggtccct
gagacatcgctctctgtccctctcatcggcaagtacctgatctttgtcatgtctgtcact
actctcatcgctaccaatcaaattgtggttctgaacttctccctgcgcagccccagcact
cacaccatgtctcataccatcaaacacatgttcctggagacggtccctcgcctcttaggc
atgtccccactggtggatgataatgaggagacaacagagataaatggagttagggagcgg
cggcgaagctcctttggcctcatgcagagagcagaggaatatgtgctcaaacaaccccgc
agtgaaatgatgtttgacaagcaaagagagaggcatggtctcacgcgatcgattgtggat
aatatagatgtcagcagcacagccaacctgtataagagtttggcacaagctgcacctgag
atcaagcaatgtgtagatgcctgcaacttcattgcagagagtacaagacaacaaaataac
attggatctgaaattgaaagctgggtactgattgggaagatgattgacaaggtgtgcttc
tgggctgccattagcctcttcatcatcggcacagtggggatcttcttaacgggacacttc
aaccgggcgccagaatttccatttcctggtcagaacaaaaaatatgtcccatcttaa
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