Scomber japonicus (chub mackerel): 128371071
Help
Entry
128371071 CDS
T09718
Symbol
nup98
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128371071 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128371071 (nup98)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128371071 (nup98)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128371071 (nup98)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
128371071 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
128371071
NCBI-ProteinID:
XP_053187248
LinkDB
All DBs
Position
13:1768842..1810336
Genome browser
AA seq
1848 aa
AA seq
DB search
MFNKSFATPFGGGTGGFGTASTFGQQNAGFGTTGGFGTSAFGATTNTGGLFGATQTKPGG
LFGSSTFSQPATSSTSTGFGFGAAGGTTTSLFGNTASGTTGGLFSQQNNAFGANKPASFG
SVSSCPPGFGTSTSSGGLFGATNTASNPFGGTNSLFGGSGFSAAQQPGTTVKFNPPTGSD
TMVKAGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPIAAQTGGLFGATT
ATSSAATGLFGAAAPNASFSFGQNKSTFGAAPAAAGFNTNAGGLFGQQAPQQAASSLFKP
FGQTTTAAQSTGFSFGNTNTMGQANTSSMVYSGTRPASQSGSMFGTAQTSAAPPGFGTAT
GLFGQTNTGFGNVGTQQSLFGNKTAGFGTTTTSAPSFGAGTGLFGNKPALALGTGTNTST
FGTERSAAAGGLFGNXTATGGLGTGLGTSFGAAVGTGQTSLFGNNQNKLGTTLGTMGTFG
ATGFNSGASTMGFGAPQQPVALTDPNAAAAQQAMLQQQLSVLAYSPYGDSPAVQNPLSDP
KKKEERLKPTNPTAQKALTTPTHYKLTPRPATRVRPKALTSSGAXKSQLFDGLDDDEPSL
TNGAFIPRKSIKKLVLKNLNSSQYNSPISKETDDLASPSEYPQNGHSHMEDEDELRELPG
PSSRADDDPEVTQFYVNPIAKPIPHGRLQTNLQDTISELNMHKXAARNGLELSSEDVSAS
LGESSAGESRGGEQQEAQSPHPAGIVLXRVGYYTIPSMEELAEMVDENGDCVVENFSVGR
KGYGSIFFPGEVNVTXTDLDEIVHFRRKEVIVYPDDKNKPPEGEDSTGERETHRRAEVTL
DGXWPNDKTSCTQIRSPERLTDMNYEGRLEKASRNKXSSFPEYRTETGSWVFEVAHFSKY
GLQDSDEEDDVPPKADPKKLKTMMSLPPSRLQQTLPASQQQMAPQAQSTVVVDLPGSMAE
LDSDMADITQSFPTESMLGGEEDSELAVAAETAAAAKLGGLISAENDVIATSGHIASSLG
INPHTLQIMKASLFAEDEEESDMFQDQGAMKISAEVSSPRLVVPGAQSRPSVGGLLQARF
TSGLLSQLSESPRAPPLSSPAAVESSRSLHWTGPGSSSSSFLLPSRPAEPTVRTVGVRRL
GGPVALKESVTQGKGGLLMDAGLYVGRSFRVGWGPGWTLAHCGHKLSSTSKHLDQEMNKT
DFSFLPKPAKNKPLAESPYKVVLEQLEGLEPPGGKLSEEEEEDEEQSRVFLQRPLEICLK
HSIVSTDGSTCPLVQPKPGVSALHEYADWILQLSTEQPHDPLLGYWAEVWTLCEALWGRL
GPADQEPDVEPPSEYQQQLERRRTFSAWLSRGATCRVEEEVALAGKGRHTDAIFSYLTGN
RISEACRLAQREGDHRLSLLLSQAMGSQYSRDLLALQLADWNRMQSDSYLTEERLRIFTL
LAGKPVWQSSDSVVNVCSELDWKRCVAVHLWFMLPPTASVADALAKYEAAFQGSCEAGKY
ACAPLPPYLEEEEEEEEEGESRRQLYDLCFHLLKLYSDRHYNLQQLLDPLTVTWERLDYR
LSWHLWGVLQALHYSHLSAPRQGLLHASYAAQLESSGLWHLAVFILLHIPDHTQRERAVR
ELLTLHCPLQETQESLRRQRFLTEKLLIPERWIHEAKATRARRDGDRHQEALHLYRAGYW
NQCHRLLIQHLASDCIINDNHDYLLEFLEGLAVPEHSACIQDWDTAGGVYLDYIRVIKTL
QDIQQMENTGYQLERLYTDVTSLCSRIELLPCSTARDRLAQSEMAKRVANILRVVLSLQH
GDAAWDSLSIPLAQLAPHITRLPMPEDYTLEELRGLTQSYLRQLIVSQ
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttgcgactcccttcggtggagggacgggcgggttcggcaccgcg
tccaccttcggacagcagaacgcaggttttgggacgacgggaggcttcggcacgtcagcg
ttcggagcgaccacgaacaccggaggcttgtttggtgccacacagactaaacctggaggt
ttgtttggctccagtacgttcagccagccggccacgtcttctaccagcaccggcttcggc
ttcggagcggccggaggaacgacgaccagcctgtttggaaacactgcgtcaggaacgacc
ggaggactcttctcccagcagaacaatgccttcggagccaataagcccgcctcgtttgga
agcgtctcctcatgtcctccaggcttcgggacgagcaccagcagcggcggcttgttcggg
gcgaccaacaccgcctccaacccgttcggaggaaccaactctctgttcggaggctccggc
ttctccgccgctcagcagccgggaaccaccgtcaagttcaaccctccaacaggaagtgac
accatggtgaaagccggtgtgaccacgagcatcaacaccaagcaccagtgcatcacggcc
atgaaggagtacgagaacaaatctctggaggagctgcggttggaggattaccaggcgggc
aggaaaggtccgaccaatccgatcgcggctcagaccggcggcctgttcggagcgaccacg
gcgacgtcgagcgccgccaccggtctgttcggagccgccgcgccaaacgcctcgttctcc
ttcggacagaacaagagcacgttcggagcagctccggcggctgcaggcttcaacaccaac
gccggcgggttgtttggacagcaggcgcctcaacaagccgcgtccagcctcttcaaaccg
ttcggacagacgaccacggcggctcagagcaccggattctccttcgggaacaccaacacc
atgggacaggccaacaccagcagcatggtttattcgggaacacggccggcgtctcagtcc
ggtagtatgttcggtacggctcagaccagcgccgccccacccggcttcggcaccgccacc
ggtctgttcggacaaaccaacaccggcttcgggaacgtcggcacgcagcaaagtctgttc
gggaataagacggccggcttcggcaccaccacgaccagcgctccgtccttcggagccggg
accggactgttcgggaacaaaccggctctggcgctcggaacgggaaccaacacgtccaca
ttcggtacggaaagatctgcggcagcaggaggtctgtttgggaacnaaacggcaaccgga
gggttagggaccggactgggaacgagcttcggagccgcggtgggaacgggccagacgtct
ctgtttgggaacaaccagaacaaactgggaaccacgctgggaacgatgggaacgttcgga
gccaccgggttcaacagcggagcgagtacgatgggctttggagcgccgcagcaacccgtc
gcgctcaccgacccgaacgcggcggccgctcagcaggcgatgctccagcagcagctcagc
gttttggcgtattcgccgtacggagactcgcccgctgttcagaacccgctgtccgacccc
aagaagaaggaggagcgcctgaagccgaccaatccgacggcccagaaggctttgaccacg
cccacgcactacaagctgaccccccggccggcgacgagggtccgacccaaagcgctgact
tcatccggagccntcaagtctcagctgttcgacgggctcgacgacgacgagccctcgctc
accaacggagccttcatacccaggaagagcatcaagaaacttgtgctgaagaacctgaac
agcagccagtacaacagtccgatcagcaaagagacggacgacctcgcttcaccctcagag
tatccacagaacggacacagccacatggaggacgaggacgagctgcgagagcttcctggt
ccgagcagccgagcggacgacgatcccgaagtgacgcagttctacgtgaatcccatcgcg
aagccgattcctcacggacgcctgcagaccaacctgcaggacaccatcagcgagctcaac
atgcacaaannagccgccaggaacggcctggagctgagcagcgaggacgtttctgcgtct
ctgggtgagagttctgctggagagtcgagaggaggagagcagcaggaggctcagtctcct
catcctgcaggcatcgttctgnaccgtgtgggttattatacgatcccgtccatggaggag
ctcgctgagatggtggatgagaacggagactgtgtggtggagaacttctctgtcggcagg
aaaggatacggctccatcttcttccccggcgaggtgaacgtgacgnngactgacctcgac
gagatcgttcacttcagacgtaaagaggtcatcgtttaccccgacgacaaaaacaaaccg
ccggagggagaagactcaacaggtgagagagaaacacaccggcgtgctgaggtgactctt
gacggangttggccgaacgataagacgagctgcactcagatccggagccccgagcgtttg
accgacatgaactacgaaggccggctggaaaaagcttcccggaacaagnngagctcgttt
cctgagtatcgaacggagacgggatcctgggtgttcgaggtggctcatttctctaagtac
ggcctccaggactcggacgaggaagacgacgtccctcccaaagccgaccccaagaagctg
aagacgatgatgtcacttcctccctccaggctgcagcagacacttcctgcctcccagcag
cagatggcgccacaggcacagtccaccgtcgtcgtggatcttcccggcagcatggcggag
ttggacagcgacatggccgacatcacccagagcttcccgacagagagcatgctgggaggc
gaggaggatagcgagctggcggtcgccgcggaaacggcagcggcggcgaagctcggaggt
ttgatctctgcggagaacgacgtcatcgctacgtccggccacatcgcatcgtcgctgggc
atcaaccctcacaccctgcagatcatgaaggcgtctctgttcgctgaggatgaggaggag
agcgacatgttccaggatcagggagcgatgaagatctctgccgaggtttcgtctcctcgt
ctcgtcgtgccgggagctcagagccgaccgtccgtcgggggtctccttcaggctcgcttc
acgtcgggtctcctctctcagctctcagagtctcctcgcgctcctcctctctcgtctccg
gccgccgtcgagtcgtcgcggtcgctccactggacgggacccggctcctcctcttcctcc
ttcctgctgccatccagacccgcggagccgaccgtcaggacggtgggggtccggcggctg
ggcggccccgtggccctcaaagagtccgtcactcaggggaagggcgggctgctgatggac
gctgggctctacgtgggccggtccttccgggtgggttggggtcccggctggacgctggcg
cactgcggacacaaactcagctcaacctctaaacacctcgaccaagaaatgaacaagacc
gacttcagcttcctgcccaaacctgccaagaacaaaccgctggctgagagtccttataag
gtggtgctggagcagctggagggtctggagcctccgggagggaagctgagtgaggaagag
gaggaggatgaagagcagagccgagtgttcctgcagcgccccctagagatctgtctgaag
cacagcatcgtgagcaccgacggctccacgtgtccgctggtccaacccaaacccggcgtc
tccgctctgcacgagtacgctgactggatcctgcagctcagcaccgagcagccacacgac
cccctgctgggttactgggccgaggtctggaccctgtgtgaggccttgtggggccggttg
ggccccgcggaccaggagccagatgttgagcctcccagcgagtatcagcagcagctggag
aggaggcgaaccttctccgcctggctctcccgcggcgccacctgcagggtggaggaggaa
gtggcgctggcggggaaaggccgacacacagacgccatcttcagctacctgacaggaaac
cgcatcagtgaggcgtgtcggctcgcccagagggaaggagaccaccgtctgtctctgctg
ctgtctcaggcgatgggttctcagtacagtcgagaccttttagctcttcagctcgccgac
tggaaccgcatgcagtccgacagctacctgaccgaggagaggctccgcatcttcacgctg
ctcgccggcaaacccgtgtggcagtcctctgactccgtggtgaacgtctgctcagagctg
gactggaagcgctgcgtggccgttcatctctggttcatgttgcctcccaccgcctccgta
gccgacgcgctcgccaaatacgaagccgccttccagggatcgtgtgaggcggggaagtac
gcctgcgccccgctgcctccgtacctggaggaggaagaggaggaggaagaggagggagag
tccagacggcagctgtatgatctctgcttccacctgctcaaactctacagcgacagacac
tacaacctgcagcagctgttggaccctctgacggtgacgtgggagcgtctggactaccgg
ctcagttggcacctgtggggcgtcctgcaggcgctgcactacagtcacctgagcgccccg
cggcagggtctgctccacgccagctacgccgcgcagctggagagcagcggactctggcac
ctcgccgtcttcatcctgctgcacatcccagaccacactcagcgtgagcgggcggtgcgg
gagctgctgacgctgcactgccccctgcaggagacgcaggagtcgctccgccggcagcgc
ttcctcaccgagaagcttctgatccccgagcgctggatccacgaagccaaggccaccaga
gcccgccgcgacggagaccgccaccaggaggcgctgcacctctaccgggccggatactgg
aaccagtgccaccgcctgctcatccagcacctggcctcagattgcatcatcaacgataac
cacgactacctgctggagttcttggagggtctggcggttcctgagcacagcgcctgcatc
caggactgggacaccgcggggggggtctacctggactacatccgggtcatcaagacgctg
caggacatccagcagatggagaacaccggctaccagctggagcgtctctacactgatgtg
acgtctctgtgcagcagaatcgagctgctgccctgcagcaccgccagagaccggctcgcc
caatcagagatggcaaagcgtgtagcgaacatcctccgtgtggtcctcagtctgcagcac
ggagacgcagcgtgggactctctcagcatcccgttggctcagctggctcctcacatcacg
cggctgccgatgccggaggattacacgctggaggagctgagaggcctgacgcagtcctac
ctgaggcagctcatcgtcagccagtga
DBGET
integrated database retrieval system
