KEGG   Scomber japonicus (chub mackerel): 128371108
Entry
128371108         CDS       T09718                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    128371108 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sjo03019]
    128371108 (smfn)
   03009 Ribosome biogenesis [BR:sjo03009]
    128371108 (smfn)
Messenger RNA biogenesis [BR:sjo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     128371108 (smfn)
Ribosome biogenesis [BR:sjo03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    128371108 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like
Other DBs
NCBI-GeneID: 128371108
NCBI-ProteinID: XP_053187290
LinkDB
Position
13:complement(30218325..30230571)
AA seq 272 aa
MPVSSRGSACVLAALRSVSRVSSVGSVGSVGSVSSVSSVCSVHSSTPGTRPAASSTLASY
FDVRTSRSVSMSSSAMSQRMVWVDLEMTGLDIEKDKIIEMACIITDCDLNILAEGPNLII
NQPDELLDGMSEWCKEHHGKSGLTQAVRDSKITLEQAEYEFLSFVRQHTPPGQCPLAGNS
VHADKKFLDKYMPQFMYHLHYRIIDVSTIKELCRRWFSDDYKMVPHKKATHRALDDITES
IKELQFYRANIFKASTDEKKRKIIENGGSNKS
NT seq 819 nt   +upstreamnt  +downstreamnt
atgccggtcagctcgcggggttcggcgtgtgtcctggcggctctgcgcagtgttagcaga
gttagcagtgttggcagtgttggcagcgttggcagtgttagcagcgttagcagtgtttgc
agtgtacacagcagcacaccgggaacacggcccgccgcgtcttccacactcgcttcctat
tttgacgtccggacgtccaggagtgttagcatgtcgtcctccgctatgtcccagaggatg
gtgtgggtggacctggagatgacaggtctggacattgagaaggacaagatcattgagatg
gcatgcattatcacagactgtgacctgaacattcttgctgaggggcccaatttgataatc
aaccagccagatgagctgctggatgggatgtcagagtggtgtaaagagcatcatggcaag
tcaggactgacccaggctgtacgggacagtaaaatcaccctggaacaagctgagtatgag
ttcctgtccttcgtcagacagcacacccctcctggacagtgtcctctcgctggcaactct
gtgcatgctgacaagaagttcctggacaagtacatgccacagttcatgtaccacctccac
tacagaatcattgatgtcagcaccatcaaggagctttgcagacggtggttttcagacgac
tataagatggtgcctcacaagaaagcaacccacagagccttggatgacatcacagagagc
attaaggagctacagttctacagagccaacatctttaaagcttcaacagatgagaagaag
cgcaagattatagaaaacggaggcagcaacaagagttaa

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