Scomber japonicus (chub mackerel): 128371108
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Entry
128371108 CDS
T09718
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128371108 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128371108 (smfn)
03009 Ribosome biogenesis [BR:
sjo03009
]
128371108 (smfn)
Messenger RNA biogenesis [BR:
sjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
128371108 (smfn)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
RNases
128371108 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
128371108
NCBI-ProteinID:
XP_053187290
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Position
13:complement(30218325..30230571)
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AA seq
272 aa
AA seq
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MPVSSRGSACVLAALRSVSRVSSVGSVGSVGSVSSVSSVCSVHSSTPGTRPAASSTLASY
FDVRTSRSVSMSSSAMSQRMVWVDLEMTGLDIEKDKIIEMACIITDCDLNILAEGPNLII
NQPDELLDGMSEWCKEHHGKSGLTQAVRDSKITLEQAEYEFLSFVRQHTPPGQCPLAGNS
VHADKKFLDKYMPQFMYHLHYRIIDVSTIKELCRRWFSDDYKMVPHKKATHRALDDITES
IKELQFYRANIFKASTDEKKRKIIENGGSNKS
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccggtcagctcgcggggttcggcgtgtgtcctggcggctctgcgcagtgttagcaga
gttagcagtgttggcagtgttggcagcgttggcagtgttagcagcgttagcagtgtttgc
agtgtacacagcagcacaccgggaacacggcccgccgcgtcttccacactcgcttcctat
tttgacgtccggacgtccaggagtgttagcatgtcgtcctccgctatgtcccagaggatg
gtgtgggtggacctggagatgacaggtctggacattgagaaggacaagatcattgagatg
gcatgcattatcacagactgtgacctgaacattcttgctgaggggcccaatttgataatc
aaccagccagatgagctgctggatgggatgtcagagtggtgtaaagagcatcatggcaag
tcaggactgacccaggctgtacgggacagtaaaatcaccctggaacaagctgagtatgag
ttcctgtccttcgtcagacagcacacccctcctggacagtgtcctctcgctggcaactct
gtgcatgctgacaagaagttcctggacaagtacatgccacagttcatgtaccacctccac
tacagaatcattgatgtcagcaccatcaaggagctttgcagacggtggttttcagacgac
tataagatggtgcctcacaagaaagcaacccacagagccttggatgacatcacagagagc
attaaggagctacagttctacagagccaacatctttaaagcttcaacagatgagaagaag
cgcaagattatagaaaacggaggcagcaacaagagttaa
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