Scomber japonicus (chub mackerel): 128371214
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Entry
128371214 CDS
T09718
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
128371214
Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
128371214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THSD1_D3
THSD1_N
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
128371214
NCBI-ProteinID:
XP_053187448
LinkDB
All DBs
Position
13:17915405..17922808
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AA seq
948 aa
AA seq
DB search
MPQAVSLLTFLLALMGYALAGLNIWPSFHVALSNASVFVDFSTKSNRSSNCNTSLSLINT
ETNTSLFTRTLPNDHTVGRVEFNCSCFLYAGTFRFLLRQTSITAVSHRNGTNGGSRESTT
WWWSSELQVQWPTFHIAVERAGNHSGSFQVRISTNEYFQACSSGLDSALFLEVNYMEYNQ
IGRNSINKVRARTRHPIKPVRSQSIELSCAFPFTEKDFIQVALRSPHTTQEVKSAGPLYL
SRIFSYKLLVENANIYKSGCEGTMTVKLVTPPCAHIDGKVLLYKDAGAGRGVAVSTGMGA
GGTALMGFRPEEPSSPHLAFNWLTRGENETEFNCSVFYPGRNKYCFRFVFNYSSSPSPAQ
TCLVVHRSADSWGPWQPWSVCSVSCGEGMRERVRECLMPSGVGEMHCTVKEKEQSLCSLE
ECIVMPVPSPSLPPVLVGVAPLGGNMVVVVGISLCLAAILATIVVTVWRKLCQTPQCSSV
RRGSMHSPGGRKLSDEASICGHSLQRPSLSDSHSPPVGMSVGVAQNGMPSLGSQPLPQTL
VIPLSHDPERLSPTGLKMLPPIFGYRLAQQQLKEMKKKGLKEATQMYHVSSSPVHDTLGE
TSASPTNSPVPTPTGFAQSALPLGLQGDTDHSHLHVAVSFSELPTQTSRITPDRLSPRVE
LVLGPPISGHASRGSSKWLDRTADWVEMVERSGLSGMGNSYHKNPNFRRTSSFNDTKPQF
PSSAHSRHFRERSMTQVGSRTLPEGSCWTKGVRERQPYCSYPIPEHGASEWAKSGPQRND
QRRPWIETAVPSLNTELKHTGTNTNITFEKNAKANLNGTRERQRGGETGGRGGEGISGIG
GPATVTSSSRGMNQLSVDRAERAEQNWNRRGPSPIQRNILARKLKEAQSFSAVKGRQRSS
TFSTSSSEQRKGRCHSLPMSGDYNNSDGSPFRLSEAEQRMLDLDLPSP
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgccacaagctgtctcactgctgacttttctgctggcgctcatgggatacgctttggca
gggctcaatatctggccctccttccacgttgcccttagcaacgccagcgtatttgtggac
ttcagcacaaaatccaatcgcagttccaattgcaacacgagtctgtctctgatcaacaca
gaaaccaacaccagcctcttcaccaggactctccctaacgaccacactgtgggtcgggtg
gagttcaactgttcatgcttcctgtatgcaggaactttccggttcctgctgaggcagacc
agcatcactgctgtttctcatagaaatgggacaaatggcggtagtagggagagcacaacc
tggtggtggagttcagaactgcaggtgcagtggcccacctttcacatcgctgtagagagg
gctggaaaccactcaggatcttttcaggtcaggatatccaccaatgagtactttcaggct
tgttccagcggcctggactctgctctcttcctagaagtcaattatatggaatacaaccag
attgggcgaaacagcatcaacaaagtccgagcccgcacacgacatccaattaaacctgtc
cgttcccagagcattgagctgtcatgtgccttccccttcacagaaaaggacttcatacaa
gtggctctacggtctcctcatacaacacaggaagtgaagagcgctgggcctctctacttg
tcccgtatcttttcctataagctactggtggaaaatgccaacatttataagagtggttgt
gaagggactatgactgtgaagcttgtaaccccaccgtgtgcacacattgatgggaaagtt
ttgctgtataaggatgctggtgctggaagaggggttgcggtttccactgggatgggagca
ggaggaacagcactgatggggttcagaccagaggaaccgtcttctcctcatttggccttt
aactggctgactcggggggagaatgagacagaattcaactgctctgtgttttacccaggg
aggaataaatactgcttccgttttgttttcaactacagtagctcccctagtccagcacag
acctgtttggtggttcacaggagtgcagactcatggggcccctggcagccatggagtgta
tgtagtgtgagctgtggagaagggatgagggaacgggtgcgggagtgtttgatgccatca
ggtgtgggagagatgcactgcactgtcaaggagaaggaacagtccctctgttcactggag
gagtgtatcgtgatgccagttccttctccatccctccctcctgttcttgttggagttgca
cccctgggtggtaacatggttgtggtggttggtatatcactttgtctggctgcgattctg
gccactattgtggtaacggtgtggagaaagctttgccagacccctcagtgcagctctgtc
cgcagagggtccatgcattcccctggtggacgcaaactttctgatgaggcctccatttgt
gggcacagcctccaaagacctagcctgtctgacagccatagcccaccagtgggcatgagt
gtgggtgtggcccaaaatggcatgccttccctgggcagtcagcctctcccacagaccctg
gtgattcctctctcacatgacccagaaaggctgtctcccacaggtctgaagatgttgcca
cccatatttgggtaccggttagctcagcagcagttaaaagaaatgaagaagaaggggtta
aaggaggccacacagatgtaccatgtttcttcaagcccagtccatgacaccttgggagag
acatccgcttcccccaccaactcccccgttcccacaccaactggatttgctcaatcagcg
ttacctttgggcctccaaggcgacaccgatcatagccatttacacgttgcagtttccttt
tcagagttgccaacacagacctctaggatcacaccagatagactgagtccaagagtggag
ctggtcttaggccctcccatttctggacatgcaagtcggggtagctcaaaatggcttgac
cgcactgctgactgggtggagatggtagagaggagcgggttatcaggaatgggaaattca
tatcataagaatccaaatttccgccggacctccagttttaatgacactaaaccccagttt
ccatcttctgcacactccagacacttcagagaaaggagcatgactcaggtgggatctcgg
actcttcctgaaggaagctgttggaccaaaggagtgagggagaggcagccgtactgctct
taccccattccagagcatggggcctcagaatgggctaaatccggaccccagagaaatgac
cagaggaggccctggatagagacagctgttccttctcttaacactgaactcaaacacaca
ggaaccaacacaaacatcacctttgaaaaaaatgctaaagccaacctcaatggaactagg
gaaaggcaaaggggtggtgagacaggaggtagaggtggagagggaatctcagggattggg
ggtccagccacggtgacttccagttctcgtggaatgaaccagctgagtgtggatcgggca
gaacgggctgagcagaactggaaccgccgcggcccatcacctatacagaggaacatcctg
gcccggaaattaaaggaggctcagtccttttccgcagtcaaagggcgtcagcgcagctcc
accttcagtacgtcatcctcggagcagaggaaaggtcgctgccactctctgccaatgtct
ggagactacaacaacagtgacggctctcctttcaggctgagtgaggcagagcagaggatg
ttggacctagatctgccctcaccataa
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