Scomber japonicus (chub mackerel): 128371377
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Entry
128371377 CDS
T09718
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128371377 (zc3h12b)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
128371377 (zc3h12b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
128371377
NCBI-ProteinID:
XP_053187659
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Position
13:complement(21312122..21322637)
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AA seq
846 aa
AA seq
DB search
MTAWSMLEKLKMEKRPCREENIDSSEAQHATDESEDGSSSESESEEQQHLKVQANSSSSC
KRREPLAATKPHRQLCRSPCLDRPSFSQSSTVQDFREDDAGAGAGIKHASDREYQTKMEF
ALKLGYSGEQVQTVLNKLGAAALINDVLAELVRLGNKVEPESQPSSSTATSVSRSPCVKE
TASPEVSLEEESVDTYDNLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEWFLEKGHKDIT
VFVPAWRKEQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYDS
DGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRP
VVPEHKKQPCPYGKKCTYGHKCKYYHPERVNQPQRSVADELRAFAKLSAVKTMSEGALVK
CGTGPATVKGDNSEAKRVAPKRQSDPSIRSVACEPPEALSIVRKSETNSVPSLVSALSVP
TMQPAKSHAAGALNTRSASSPVPGSLQFSHSSLEHMSSVQYPPILVTNSHGASVTYSEQF
PKYDSVSDHGYYSLHSDFSNMSMSSMHNVDSFCSMEHEHGVYQRNPSHCPESCLSHSNSD
SFSSYGDLYPSSVDSSLEESMKGQQQSSAQARMHAFSHGFRHEALTRVQSYGPEEPKQGP
RKQSGAHLAPHIQHAAVGARSSCPGDYPLTQNVLPPLSSQPTRSLGMTRMDSISDSRLYD
SNPMRQRRPPLCREQHASWDPLPCGNESYGYHSYPLSNSLMPCCERVMVRSMPDKMEQIW
NSPWETPSAAEHQERYVIPDHQYQTYRNLCNIFPAYVVHSVMEKNPHLTDPQQLAAVIVT
KLRSCH
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatggtccatgttggagaagctcaaaatggaaaaacgcccatgcagggaagag
aacattgactcaagtgaggcccagcatgccactgatgagtctgaggatggaagcagctca
gaaagcgaatccgaggagcaacaacacctgaaggttcaggctaacagcagcagcagctgt
aagaggagggagcccttggctgctacaaaaccccaccgccagctctgtcgttctccgtgc
ctggaccggccaagtttttcccagagtagcaccgtgcaagattttcgtgaggatgacgcc
ggtgcaggagcggggatcaaacatgccagcgacagggagtaccagacaaagatggagttt
gctttgaagctgggctattcaggagagcaagtgcagacagtgctcaacaagttgggagct
gccgctcttattaacgatgtgctcgctgagttagtaaggcttggaaacaaagtagagcct
gaaagtcaaccttccagcagtacggccacatctgtgtcacgctccccctgtgttaaagag
accgcgagtccagaggtgtcattggaagaggagtctgtggatacatatgataatctcagg
cctatcgtcatcgatggttcaaatgtggcaatgagccatggaaacaaagaggtgttctca
tgccgtggtatccagcttgctgttgaatggttcctagagaaaggacataaagacatcact
gtgtttgtcccagcctggaggaaggagcaatcaaggcctgatgccctcattacagatcaa
gaaatattacgcaagctggaaaaagagaagatcctggttttcaccccatctcggagggtt
caaggccgaagagtggtgtgctatgatgatcgcttcatagtgaagctggcttatgattct
gatggaattattgtgtcaaatgacaactatagggacttacaaaacgagaagccagagtgg
aagaagttcatagaggagcgtctcctaatgtactcatttgtcaatgacaagtttatgcca
cctgatgatccactgggaagacatggtccaagcttagaaaatttccttcgcaagcgtcct
gttgttccagagcacaaaaaacaaccttgcccctatgggaaaaagtgcacatatggacac
aagtgcaagtactaccatccagagcgcgtcaaccagccgcagcggtcagtggctgatgaa
ctgcgggcttttgccaaattgtctgcagtgaagacaatgagtgagggggctttagtcaaa
tgcggtactggtccagcgactgtaaaaggggacaactctgaggccaaacgtgtggcaccc
aaacgtcagtctgaccccagtattcgttcagtggcctgtgaacctccagaagcgctgtca
attgttaggaagtctgagacaaattcagtgccttcccttgtgtctgctctcagtgtgccc
accatgcagcccgccaagagccacgcagctggggccttgaatacccgatcagccagcagc
ccagtgccaggttctttgcagttctcacacagttctctggagcacatgtctagtgtacag
tacccgcccattttggttactaatagtcatggcgcctctgttacatacagtgaacagttc
ccaaagtatgactcagttagtgaccatggatattactcactgcacagtgatttttcaaac
atgagcatgagcagcatgcataacgtcgacagtttctgtagcatggagcatgagcatggt
gtgtatcagagaaatcccagccactgccctgaatcctgcctcagccattcaaacagcgac
tcgttctcctcctacggggacctgtacccaagctctgtggacagtagcttagaggagagc
atgaaggggcagcagcagtcttctgctcaggctagaatgcacgctttctcccatgggttt
cggcatgaagcgctgactagggtacagagttatggaccagaggagcccaagcagggccct
cgtaagcagtctggagctcatctcgcaccacatatccagcatgctgcagtgggggccagg
tccagctgccctggagactatcccctcactcagaatgtcctcccacctctgtcctcccag
cccactcggtctcttggcatgactcgtatggacagcatatcagattcacggctgtatgat
agcaacccaatgagacagaggcgacctccactgtgccgcgagcagcacgcaagctgggac
cctctgccttgtggtaatgagtcctacgggtatcactcatatccactgagtaacagcttg
atgccatgttgcgagcgggtgatggtccgcagcatgccagacaaaatggaacaaatttgg
aactcgccgtgggagaccccatctgcagctgaacaccaagagcggtatgtcatcccagat
caccagtatcaaacatatcggaacctttgtaacatctttcctgcttacgtagtccactca
gtgatggagaagaaccctcatttgacagatccccaacaactcgccgccgtcattgttaca
aaactgagatcatgccattga
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