Scomber japonicus (chub mackerel): 128371501
Help
Entry
128371501 CDS
T09718
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
128371501 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128371501 (cngb1a)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
128371501 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
128371501
NCBI-ProteinID:
XP_053187848
LinkDB
All DBs
Position
1:41916262..41950026
Genome browser
AA seq
1288 aa
AA seq
DB search
MLSWVVKVVPQPPEPTPKNGDEPKEEKPAPPPVEPPPPSPEKKVTFDEVKEGKKILTLSA
CSVDVDQQRFASTLTKTDPSPVHHQGELRPGVRGQRSRTDPGSEVSKGMMAWLAQGLEKV
VPQPELKPKEPTAAEQPPEPPAPPPVEEKPPVRPPSPPAPEPPVAVVEVEASPEDNTDSK
PFPPRMMDWIKQGIEKVVPQPETGATKVEVQPATADDDEEQQPNMIGWIVTEIGRIFPQP
VQQQDSGGDDVQSISIVQKQPELVLEDVEDEETKKAEERVLQMESIKKEAAQAQMEERQK
QGLLEAARMAEEIAMKAAEEAVRQLEEDQSSKIIIEEMPETTEQLPNILEEENEDDAELR
NLQQDSEDSTDNKTPEETKVAEENNKTNVNEERKPDQDDAEPELAELPSINEAEHGSERR
ELESPITQQPEPQDSEAAPTTDPDNEATEAGGGVPDICSPLKSFLLQIPYAAECLESCKK
LMHDNDLTPPKLSMPTPPPELAMLSQELDMMRQELTQITQELTLMTQELSQLPEQARQYC
MSIVNRFRRGQNRGLTIPQIITTAEPDSPTTPHRAKPSLAGDLSVDVDGDGEDDELSKIS
LLGAEEHVRPASAASVGSVAIQDRLSDLVKLFKGRTEQRRDRLVDPDESDEEAPPTAPAA
APPPPPPEEKKEAPDDAEEEEEKPWFTFELLGQPVEIPKLVKLPKLPDWLQVIVDYRFPD
SIDPFTDLIYVLWLFLVVAAWNWNMWLIPVRWAFPYQTPENIYIWLAIDYTCDFIYITDI
LVFQPRLQFVRGGDIVCDKKDMRENYMTTERFKYDVISLFPMEIFYYFTGVNSLLRFPRL
LKYMAFFEFNDRIEAVMKKAYIYRVIRTSTYLLYSLHINACLFYVGSDYEGLGSTKWVYN
GQGFAYIRCYYFAVKTLITIGGLPDPQTVFEICFQLINYFVGVFAFSIMIGQMRDVVGAA
TAGENYYRACMDSTVKYMNSYHIPSEVQNRIKTWYDYTWKIQGMLDEQELLVQLPTKMRL
DIAVDVNYAIVSKVALFQGCDRQMVFDMLTRLKSVVYLPGDFVCKKGEIGREMYIIKQGE
VQVVGGPDLQTVFVTIRAGSVFGEISLLAGGGGNRRTANVKAHGFANLFILDKKDLAEIL
VHYPESQKLLRKKAKMMVTKDVKPVDKGKEVEVIPPRPDTPKMFKAALKVTEQAGIEGTF
AKLKKTYKPADGDDEAPPSFSPLPPPSPMHRRSPIPTPARRDDDDTVCETADSSMLIRMT
PRVEGEELLSVEVAPGDKDGEEEKKKEG
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctgggtggtgaaagtcgttccccagccgcctgagcctacgcctaaaaatggc
gacgagccaaaggaggagaaaccggctccgccccccgtggagcccccgcccccctctcct
gagaagaaagtgacatttgatgaagttaaagaaggtaaaaagattctcacactctcagcc
tgcagtgttgacgtggatcagcagcgctttgcctcaaccctcaccaaaactgacccgagc
ccagtccaccaccaaggtgagctcagacccggggtcagaggtcagaggtcaagaacagac
ccagggtcagaggtcagtaaagggatgatggcgtggctcgctcagggtttggagaaagtc
gttccacagccggagctgaagcccaaagaaccgacggcagccgagcagccgcccgaacct
cccgctccgccgccggtggaggagaaaccgccggttcgtccaccttctcctccagctccg
gagcctccagtcgctgtggtggaggtggaggcaagtccagaagacaacactgacagcaag
cctttcccacccaggatgatggactggatcaaacagggcatcgagaaggtggttcctcag
ccagagaccggagcaactaaagtcgaggttcagccggcaaccgcagatgacgacgaagag
cagcagcccaatatgatcggctggatcgtgacagagatcggacgtatcttccctcagcct
gtacagcagcaggattcaggtggtgacgatgtacagagcatcagcatcgttcagaagcag
ccagagctcgttctggaggacgtggaggacgaggagaccaagaaggcagaggaacgcgtc
ctacagatggaaagcatcaagaaggaagcggctcaagctcaaatggaggaaagacagaag
caggggcttctggaggcggcccgcatggctgaggagatcgccatgaaggcagcagaggag
gcagtgagacagctggaggaggaccaatcatctaagatcatcatagaggagatgccagag
accactgaacaactaccaaacatcctggaggaggagaacgaggatgacgcagagttgcga
aacctgcagcaggacagtgaagacagcacagacaataagactcctgaggaaactaaagta
gcagaggaaaataacaaaaccaatgttaacgaagagagaaaacctgatcaagatgatgct
gaacctgagctggcagagcttccttccataaacgaggcagagcacggatctgagaggaga
gagctggagagtcccatcacccaacaaccagagccacaagattcagaagctgcgcccacc
acagatccggacaatgaagcaacagaagcaggtggtggagttcctgacatttgctctcca
ctaaagagctttctgcttcaaatcccatacgctgccgagtgccttgagagctgcaagaag
ctgatgcatgataatgacctcacccctcccaaactgtccatgcccaccccaccgccggag
ctcgctatgctgagccaggagcttgacatgatgaggcaggagctcacccagatcacccag
gagctcaccctgatgacccaggagctgtcgcagctccctgagcaggcgcgccagtactgc
atgagcatcgtcaatcgcttcagacgggggcagaacagaggcctgaccatcccccaaatt
atcacaactgcagagcctgactccccaacaactccccacagagcaaagcccagtcttgca
ggagatttgtctgtagacgtagacggagacggagaagatgacgagctgtcgaagatcagc
ctgctgggtgcagaagagcacgtgcgacctgcgtcagccgccagcgtcggcagcgtggcc
atccaggaccgcctgagcgacctggtcaagctgtttaaaggccgaacagaacaaagaaga
gaccgtttggtggatccagacgaatctgacgaagaagccccccccaccgcacctgctgct
gcccctcctccacctccaccagaggagaagaaggaggctccggatgatgcagaagaagaa
gaggagaaaccgtggttcacatttgaacttttgggacagccggtggaaattcccaaactg
gtcaaacttcccaaattgccagattggctccaagtcatcgtagattatcgcttccccgac
agcatcgacccgttcaccgatctgatctacgtcctgtggctgttcctggtggtggcggca
tggaactggaacatgtggttgatccccgtccgctgggcgtttccttaccaaacccccgaa
aacatctacatatggctggcgatcgactacacctgcgacttcatctacatcaccgacatc
ctcgtcttccagcccagactgcagttcgtccgtggaggagacattgtgtgtgataaaaag
gacatgagagaaaactacatgacaactgagagattcaagtatgatgtcatcagtctgttt
cccatggagatcttttattatttcaccggagtgaactcactgctgcgattccctcgtctg
ctgaagtacatggctttctttgagttcaacgacagaatagaagccgtgatgaagaaggcc
tacatctacagagtgatccggacctccacctacctgctttactctctgcacatcaacgcc
tgtctgttctacgtgggctccgactacgaaggactgggatccaccaaatgggtctacaat
ggacaaggcttcgcgtatatccgctgctactactttgctgtgaagactctgatcaccatc
ggaggacttcctgacccccagaccgtctttgagatctgcttccagctcatcaactacttc
gttggtgtcttcgctttctccatcatgattggtcagatgagagacgtggttggagcagcg
acggccggagagaactactaccgagcctgcatggacagcacggtgaagtacatgaactcc
taccacattccctccgaggtccagaaccgcatcaagacctggtacgactacacctggaag
atccaaggcatgctggacgagcaggagctcctggtgcaacttcctactaagatgagactc
gacatcgctgtggacgtgaactacgccatcgtcagtaaagtcgctctgtttcagggatgt
gacagacagatggtgttcgacatgctgacgagactcaaatctgtcgtctacctgccagga
gactttgtctgtaaaaagggggagatcggcagggagatgtacatcattaagcagggggag
gttcaggtggtgggcggtcctgacctgcagacggtgtttgtgaccatcagagccggctct
gtgttcggagagatcagtttgctggcgggaggcggaggaaaccgtcgtacagccaacgtg
aaggctcatggattcgccaacctcttcatcctggataagaaggacctggcggagatcctg
gtccactatccagagtcccagaaactcctccgcaagaaagccaagatgatggtgacgaag
gacgtgaagccggtggacaaaggtaaagaggtggaggtaatcccacccagaccggacact
cctaaaatgttcaaagcggctctgaaagtgacggagcaggcgggaatagaaggaaccttc
gccaagctgaagaagacctacaaaccggctgatggcgatgacgaggctccgccctctttc
tccccgctccctcctccctctccgatgcaccgccgctctccgatcccgacgccggctcgc
cgagacgacgacgacaccgtgtgcgagacggccgacagctcgatgctcatcaggatgacg
cctcgcgtggaaggggaggagcttctgtccgtggaggtggcgcctggagacaaagacgga
gaagaagagaagaagaaggagggatga
DBGET
integrated database retrieval system
