Scomber japonicus (chub mackerel): 128371539
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Entry
128371539 CDS
T09718
Name
(RefSeq) short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128371539
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128371539
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
128371539
NCBI-ProteinID:
XP_053187860
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All DBs
Position
13:complement(20471379..20478043)
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AA seq
1030 aa
AA seq
DB search
MENLTPEQWREIMNKKMQFPPELIGAIQEGKTELVCGLLKTGDGIIRQLDDSEDRLWREA
LNLSIRLGGEDVMDALLQGVKFDFRQIHEALLVAVDTNQPHVVKRLLDRLDQEKGNKMDV
RSFSQAIFDHSIDNSQFAPGVTPLTLACQKDLYDIVTMLSLKGHGIPWPHKMSCACLECR
NGRQYDLLKFSLSRINTYRGIASRAYLSITSEDAMLSAFSLSRELRKLSQKEPEFKPQYL
SLEELCQEFAVELLGMCRNQSEVTTILNSCGEQSQDSFDQQAFEEGIPNLSRLRLAVNYN
QKQFVAHPICQQVLSSIWCGNLAGWRGSRTAWKLFVSVCIFLTMPLLCLVYWIAPKSKVG
KLLKIPVIKFLLHSASYLWFLITLLGESITMEMYRDIFASRQQNILHSSFHMVWVVGFFW
YECKEVWIEGLRSYFLDWWNCLDMMVLSMYLASFTLRVLIMLKGYVLCPDANSTEECVYF
TQTVRKDWHQEDPQLISEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGKMIDDMMRFM
FILMIIGTAFLCGINNVYVPYVISPHLGRFNETFHFLFWTMFGVANQDYVDMPQFVLAEF
VGRILYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKAFFYIIRGICRRICCCCCCNSETKYPPITSMSNEKGSNESQLPYRQQVIRA
LVQRYIESARREFKETKRKDIGNRITELNKAICRMHSDIKLLHQYLVEDGNPAMTKDSSS
FLGKYIIGAKNNFRGFNSKQDDKNTLLNVTVHNGEEEEDQEKVDIKQESGAQQNQVGEPA
AEGSKRVTDCDVVKMEEGRANVEQGDKKETEKKEQAETDKNDNSDSEVKGEIAAGASFNN
VEEKVEGTQDEAETRKEGETLTGEKVDEKHTGMSPEQTENMKVDDEHTDTNKVMNSFKDI
ELQEKKVEARWVKGRKFERNITERSGVKESHERPGTKKIIPSPTGSSSSQDTGFGSQEGE
GSIDGMLVSP
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacctcacgccagaacaatggcgcgagattatgaacaaaaagatgcagttcccg
ccggagctcatcggtgctattcaggaagggaaaacagaactggtatgtggactgttgaag
accggtgatggcatcatccgacagctggatgactcagaggatcgcctgtggagggaggcc
ctcaacttgtccatccgcctgggaggcgaggatgtcatggatgcccttctgcaaggggtc
aagtttgacttccggcagattcacgaggccctgctggttgccgtagacaccaaccaacct
catgtggtaaagcgcctgctggaccgcctggaccaggagaaaggcaacaagatggacgtg
cgctctttctctcaggccatctttgaccactctattgataactcccagtttgcccctggt
gtgactcctctgaccttagcctgccagaaagacctgtatgatatagtcaccatgctcagc
ctaaaaggtcacggcatcccatggccacacaagatgtcctgtgcctgtctggagtgccgt
aacggccggcagtatgacctcttgaagttctccttgtctcgcatcaacacctatcgcggc
attgccagccgtgcctacctgtccatcacctctgaggacgccatgctcagcgctttcagc
ctcagcagagagctccgcaagctctcacaaaaagagccagagttcaagcctcagtacctg
agccttgaggagctttgtcaggagtttgccgttgagttgctgggaatgtgtcgcaaccag
agtgaggtgaccactattctgaacagctgtggagaacagagccaggactccttcgaccaa
caggcctttgaggagggaatacccaacctttcacgtctgcgcctcgctgtcaactacaac
cagaagcagtttgtagcccatccaatctgccagcaggtgctgtcatcaatctggtgtggg
aacctggccggctggcgaggcagcaggacagcctggaagctgtttgtgtctgtctgcatt
ttcctcaccatgcccctcctctgccttgtatactggattgcaccaaagtcaaaggtagga
aagctgctaaagatacctgtgatcaagtttctccttcactcagcctcctacctgtggttc
ctcatcacattactcggagaatcaataaccatggagatgtatcgagacatatttgcttca
aggcagcagaacatcttgcacagttccttccacatggtgtgggtggtcggattcttctgg
tatgagtgtaaggaagtgtggattgaagggctgcggagttacttccttgactggtggaac
tgcttggacatgatggtgctcagcatgtacctggcgtcctttacattacgtgtgctcatc
atgctcaaaggttacgtcctctgtcctgatgctaacagtacagaggagtgtgtctacttc
actcagactgtacgtaaagactggcatcaggaggacccccagctgatttcagaggtgctg
tttgcagtgactagcatgttgagtttcacacggctggcgtacattctgccagcccacgag
tctctgggaactctgcaaatctccatagggaagatgattgatgatatgatgagattcatg
tttatactgatgatcattggaacagccttcctctgtggcatcaacaatgtttatgttccg
tatgtcatctctccacaccttggcaggtttaatgagacattccacttcctgttctggacc
atgtttggcgtggccaaccaggactatgtggatatgccacagtttgtgttagcagagttt
gttggaaggattctgtatggcatcttcacactcgtcattgtgatcgtcctcctcaacatg
cttattgctatgatcaccaactcttttcagaaaattgaggatgatgcagatgtagagtgg
aaatttgcacggtcaaagctgtatctcagttacttcagagagggtctcaccatgcctgtt
cccttcaacatcatcccttcacccaaagccttcttttacattataaggggtatctgtaga
cgaatctgctgctgctgctgttgtaattctgagacaaaataccctcccataacctcaatg
tccaatgaaaagggatctaatgagagccagttaccttaccggcagcaagtgatcagagct
ctggtgcagcgctacatcgagtcagctcgcagggagttcaaggagaccaagaggaaagat
attggtaatcggatcactgagctgaacaaagccatatgcaggatgcacagtgatataaag
ctactgcatcagtatctggtggaagatggaaaccctgcaatgaccaaggacagctcctct
tttctggggaaatacatcattggtgccaagaacaatttcagaggttttaatagcaaacaa
gatgataaaaatacattgcttaacgtgacagtgcataacggagaggaagaggaggatcaa
gaaaaggttgatataaagcaggagtcaggagcccaacagaatcaggtgggcgaacccgca
gcagagggatcaaagcgggtaactgactgtgatgtagtgaagatggaggaaggcagagct
aacgtagagcaaggagataagaaggaaacagagaaaaaagaacaggcggaaacagacaaa
aatgacaatagtgacagcgaagtgaaaggggagatagcagcaggtgcaagttttaataac
gtagaagaaaaggtcgagggcacacaagatgaggcagaaacaagaaaggaaggagagacc
ctcacgggggagaaggtggatgaaaaacacacaggcatgagccccgaacaaactgaaaac
atgaaagtcgatgatgaacacactgacacaaataaagtcatgaacagcttcaaagacata
gagctgcaagagaaaaaagtggaagcaaggtgggtgaaaggcaggaagttcgagcgcaat
ataacagagaggtctggggtcaaggagagccacgagagacctggaaccaagaagattatt
ccttcaccaacaggcagcagcagctcgcaagatacaggctttggttcccaagagggggag
ggatcgattgatgggatgctagtgagcccgtaa
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