Scomber japonicus (chub mackerel): 128371553
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Entry
128371553 CDS
T09718
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03030
DNA replication
sjo03420
Nucleotide excision repair
sjo03430
Mismatch repair
sjo03440
Homologous recombination
sjo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128371553
03420 Nucleotide excision repair
128371553
03430 Mismatch repair
128371553
03440 Homologous recombination
128371553
03460 Fanconi anemia pathway
128371553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128371553
03032 DNA replication proteins [BR:
sjo03032
]
128371553
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128371553
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128371553
DNA replication proteins [BR:
sjo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128371553
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128371553
MMR (mismatch excision repair)
128371553
DSBR (double strand breaks repair)
HR (homologous recombination)
128371553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
CATSPERD-E_C
SOG2
IBR
Motif
Other DBs
NCBI-GeneID:
128371553
NCBI-ProteinID:
XP_053187878
LinkDB
All DBs
Position
13:complement(15376039..15424960)
Genome browser
AA seq
703 aa
AA seq
DB search
MSVRLTQGAVEALYKGEEVNNPVLQLLKIGHINSASGPTRFRLIMSDGLNSLSSFLLATQ
FNNLAEDNLLVPNCVCMLKKTIKNTLSDGRCVVIVMDIEILKSAEETGGKIGNPTPYNTD
GKTSSPVKSASSTSVPASPPSAAVPGPSHNNNSTAASPPRGRGRGFMGKPPVRTSPWNAS
PMKTSSAKTSPWEDSPMKTSPWKDSPMKTSPWKDSPMKTSPAKMPAWKASPTKTTPTKSS
PWKPSPTKTTPTKTSPWKSPMKAASSSPDSSPKMLPIASLNPYQTKWTIRARVTNKSNIR
TWSNSKGEGKLFSFDILDESGEIKITAFNKEVDKFFSLVEQGKVYYISKASLKVANKQYT
TLKNDYEMTLHAHSSIVPCDDSQDVPTMNCDFVPIAEMENIDKDAIIDVIGVCKSAEDVS
RITTKASREVSKRALNLIDTTGKVVTVTLWGEEAEKFDGSGQPVVAIKGARLSDFGGRSL
SALFSSTVMVNPDMPQAFRLRAWYDKEGYAVDSQSLTEARSVGSRGKMNWKTLSDIKNEH
MGHRDKADYFSCMATVVYIRKENCLYQACPSADCNKKVIDQENGLYRCEKCNREFPNFKY
RLLLSANIADYGDNQWVTCFQETAEALLGRSAETLGYLRDTDEAAFDEVFQKVNYTTHIF
NNRVKLETYNDETRVKVTVMEVQPVDHREYSRRLLSNIHKLAS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacgactcacacagggggcagttgaagccctgtacaaaggtgaagaggtgaac
aatcctgtgctgcagcttctgaaaattggtcatataaatagtgcctcgggtccaacaagg
ttccgtcttattatgagtgatggtctgaactctctgtcttccttcctgttggcaacccag
tttaacaatctggcagaagacaacctcttggtaccgaactgtgtgtgtatgttgaagaag
accatcaaaaacacattgtcagacggcaggtgtgtggtgattgtgatggacatagaaata
ttgaagtcagccgaggaaactggagggaagattggaaatcccaccccatataatacagat
ggtaagacttcatctccagtgaagtcagcctcgagcacctctgtcccagcatcccctcca
tctgctgcagtccctggaccctcccataacaacaatagcacagccgcttctcctccccga
ggccgtggaagaggtttcatgggaaagccacctgtcaggacgtcaccgtggaacgcttca
cccatgaagacgtcatcggcaaagacatcaccgtgggaggattcacccatgaagacatca
ccgtggaaggattcacccatgaagacatcaccgtggaaggattcacccatgaagacatca
ccagcaaagatgccagcgtggaaagcttcacccacaaagacaacacctacaaagtcgtca
ccatggaaaccttcacccacaaaaacaacacctacaaagacgtcaccatggaagtcaccc
atgaaggctgcgagctcttctccagattcttcacctaaaatgcttcctattgcgagcctc
aacccctaccaaaccaagtggactatcagagcacgagtcaccaacaagtccaacattcgc
acctggagtaactctaaaggagagggaaagctcttctcttttgacatattggatgaaagt
ggagaaatcaagatcacagccttcaacaaggaagtggacaagtttttctctctagtggag
caaggcaaggtgtactacatctctaaggcgtcactgaaggtggccaacaaacagtacacc
acactgaagaatgactacgagatgaccctccatgctcattcctccattgtgccatgtgat
gacagtcaggacgtccccacaatgaactgcgactttgtgcccatcgcagagatggagaac
atagacaaggatgccatcattgatgtgattggagtgtgcaagagtgcagaggatgtgtcc
cgcatcaccacaaaggccagcagagaagtctccaagagggccctcaacttaatagacacc
actggaaaagtggtgacagtcacactgtggggagaggaggcggagaagtttgacggctct
ggacaacctgtggtcgccattaaaggagctcgcttgtctgattttgggggcagatctctc
tctgctttgttcagctcaaccgtgatggtcaacccagacatgccacaggcctttagactg
agggcctggtatgacaaagaaggctatgcggtggacagccaatccctgacagaggcacga
tcagtgggcagcagaggaaagatgaactggaaaacactgagtgacattaagaatgaacac
atgggacacagagataaggcggactatttcagctgcatggcgacagtggtgtacatccgt
aaagagaattgtctgtaccaggcctgtccatctgcagactgcaacaagaaggtcatagac
caagagaatggactgtaccgctgtgaaaagtgtaacagagagttccccaactttaagtac
agactcctactttctgctaacattgctgactacggggataaccagtgggtgacatgtttc
caggagacagctgaggccttgttgggtcgcagtgcagaaacactggggtatctcagagac
acagatgaggctgcattcgatgaagtcttccagaaagtcaactacacaactcacattttt
aataacagagtcaagctggagacgtataatgatgagacccgagtaaaggtaaccgtaatg
gaagtccaaccagtcgaccacagggaatacagcaggagactcctcagtaacatccacaaa
ttggccagctga
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