Scomber japonicus (chub mackerel): 128371827
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Entry
128371827 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43 isoform X1
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128371827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128371827
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128371827
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128371827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
PA
zf-ANAPC11
zf_RING_Vps8_fungal
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
128371827
NCBI-ProteinID:
XP_053188181
LinkDB
All DBs
Position
13:complement(24270824..24360503)
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AA seq
827 aa
AA seq
DB search
MTIPQRRLAGLWPWLLMAALQVVLGQPGLESERPALRAVIMVTLLKQEPTRKPITLEGVF
VGGSAGNAEGKLMQYHPLSLCNTSEDERQESDFITIVKLEQTVRRCLPLLDKARMALEKG
AQAVIFDVSDDANAAADLPETDSLPRPVVLVKAKDAEELMSLVNKNEEAKVQIKILLEQH
RWPHYDVGILLTIVLAILTIVLIFAFRYKCKSNRTWDSVHQQTMRAINRLETKTYNSQGC
SASQRHRAAWGSASSSNSSPVCAICLEEFQDGQHLRIISCAHEFHKDCVDPWLLQHRTCP
LCMHNIMGEDKHISSTERQPQRSRHQQSSEQMQGFLHSQPYSSPRNHPFPQHDIPFSMRP
HYPRGPSGHYPSLGHYSGSSPMDTQTLRFLASRPLGSSCGYHLPAEGPGRPHRIGGNCRT
STHHYTPRRSCHNYRSSCPAQRSVSSSRLHHTTSIAPQNRGAPPHSRQEDGSCSGGSYHT
ERSGYLADGPASDSSSGPCHGSSSDSVLNCTDVSLQGVYGSWSTFRSSLSSDYDPFVYYG
PGPGRAPRRNSLEAGAQARPRSLDSVVNKAGCTEEQPQTVFSHIHYHRHRHHHYEEGEHS
QGPSRGSDEEQGAAAAAAAAAPAALVLDKDSPVCPPKHSPCQCPKPDPTDRPGPGTEGQD
HDPGSPTGPSVLVSPIPLQLQPHCCHQGHGHPPNPRGRVGGCVLDGPSVRFHQSLDLQDD
RSVHIHYGQGPGFCCSPPELRPALLPVPLILDSGGMEEWPCCAGAHVVWQKRVQQARSEP
QLLGPGTSMDRPPCRFHHNPAADRNTDICLYCQTLHHNQGSEEESGV
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcccccagcggcgcctggccgggctctggccgtggctgctcatggcggccctg
caggtggtgctgggccagccgggcctggagtccgagcggccggccctccgagcggtcatc
atggtgacactgctgaagcaggagccgacgcggaagcccatcaccctggaaggggtgttc
gtgggaggtagtgccggcaacgcggagggaaaactaatgcagtatcaccctctgtctctg
tgcaacacaagtgaggatgaacgacaagagagtgacttcatcaccattgtcaaactggag
cagacggtacgtcggtgtctgccgctgctcgataaggctcgcatggcattggaaaaagga
gctcaggctgttatcttcgacgtcagtgatgatgctaatgctgctgctgatctgccagaa
acagactctcttccccgtccagttgtgctggtgaaagccaaggatgctgaggagttgatg
agtttggtcaacaagaacgaggaggccaaagttcaaatcaagatcctgctggagcagcac
agatggccacactatgatgtgggcatcctgctcaccatcgtcctggctattctgaccatc
gtcctaatctttgctttccgctacaagtgcaaatccaacagaacctgggactctgtccat
cagcagaccatgcgggccattaatcgattggagaccaaaacctacaactcgcagggctgc
tcggcctcacagcgccaccgtgcagcctgggggtcagccagcagctccaactccagtcca
gtctgtgctatctgcctggaggagttccaggacggacagcatctgaggatcatctcctgc
gctcatgagttccataaagactgcgtcgacccctggcttctgcagcaccgcacctgtccc
ctctgcatgcacaacatcatgggtgaggacaagcatatttccagtacagagcggcagccc
cagaggagcaggcaccagcagagttcggagcaaatgcagggctttctgcactctcagcct
tacagtagcccacgcaaccaccccttcccccaacacgacatccccttctctatgaggcct
cactaccctcgcggaccctctgggcactatccctccctcggccactacagtggttcttct
cccatggacacccaaacattacgtttcctcgccagcaggccgctcggctcctcctgtggg
taccaccttcctgcagagggtcccgggaggccccacaggatcggaggtaactgcaggact
tccactcaccactacaccccccgtcgatcctgccacaactatcgctcgtcctgtccggct
caacgcagcgtgtccagctccagactgcaccacaccacctccatcgcgccacagaaccgg
ggagcgccaccccacagccggcaggaagatggcagctgctccggcggcagctaccacaca
gaacgcagtggatacttagctgatgggccggctagtgactccagctcagggccgtgccat
ggctcctccagtgactcggttctcaactgtactgatgtttccctgcagggagtttatggc
agctggtccaccttccgtagctctctgagtagtgactatgatccgtttgtatattatggg
ccaggtcctgggcgtgccccccgcaggaacagcctggaggcaggggcccaggcccggccg
aggtctttggattctgtggtgaacaaagcgggctgcaccgaagaacagccacagactgtg
ttcagccacatccattaccaccgccacagacaccaccactatgaggagggggagcacagc
cagggcccaagcagaggctcagatgaggagcaaggggccgctgctgccgctgctgcagct
gcacccgctgccctcgtcctggataaagactcacctgtatgccctcccaagcacagcccc
tgccagtgcccaaagccggaccccacagatcggccgggccccgggacagagggtcaggac
catgaccccggcagccctactggaccctctgtcctggtgtccccgatccccttacagctc
cagccccactgctgccatcagggacacggacaccctcccaatcctcgtgggcgagtgggt
ggctgtgtgctggatggcccctctgtccgcttccaccagagcctggatctacaggacgac
cgtagcgtccacatccactacggccagggcccaggcttctgctgctcgcctcccgagctg
cgacccgccttgctccccgtacctctcattctggactctggaggtatggaggagtggcct
tgctgtgccggggcacatgttgtgtggcaaaagcgggtgcagcaggctcgctcggagcct
cagctgctggggcctgggacctctatggacaggccaccctgcaggttccaccacaaccct
gctgctgaccgtaacacagacatttgtttatactgccaaacattacaccacaatcaggga
tcagaagaggagtctggcgtgtga
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integrated database retrieval system
