Scomber japonicus (chub mackerel): 128371859
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Entry
128371859 CDS
T09718
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128371859 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128371859 (pcf11)
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128371859 (pcf11)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128371859 (pcf11)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128371859 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
128371859
NCBI-ProteinID:
XP_053188224
LinkDB
All DBs
Position
13:complement(1526095..1543372)
Genome browser
AA seq
1568 aa
AA seq
DB search
MDCLLIHGGAAVASPAGSKMEDACREYQSSLEDLTFNSKPHINMLTILAEENLDFAKDIV
AIIEAQISKAPTAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFLCVFEKVDENTKKSL
FKLRSTWDEVFPLKKLYALDVRVNSVDSAWPIKPLPPTVNASIHVNPKFLKQSESETPSS
RPVTTPPAAPAPSPTPPPPPAAPPSAAPAPVAPGAAVSQSSLTQEQLIRQQLLAKQKQLL
ELQQKKIELELEQTKAQLAGGFVLPTSVSTTPSSSSSSSAAALKLSSQTAPVVRPWIPPQ
TDPKPSTRDPRLNRSGPPTAPHPKEQSAGKKDGPPSTGSPALTPEKRPAEKPVRPDKTRQ
PRKEIQEEKKSKSPSPLAKNLQVKNKHGEAEAPKSADGTKKDPRLRKRPQEKSGEAKEDE
QKEKKRCNDKKEREDALRASEPPRSNKPKLLNGSMPKHDRDEATDKPEFKAGGNARTHAR
KRTRSRSRSRSPASSPKRKDRRSPKSRARSSSLSPSPSHKPGKPRRIRADEPPHGKPGRE
DRLAPKKNQSESRRSKRPAEERHSESRDSHSPRGHDGAGKDKDAPHRWRSGWEENKHLKL
SEDPHVKPAPQRHKPYSTPTRPPTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKRL
ESGEISQEDFLNMAHQIKHFFQYQEEKQQQDHDDFPSKKPLPLLAAARDGVGEAAYYEHK
SKLRKTQVTHRAAGEEWEGEESPEEAEDAAQDEKGGPAHLATHKYNRPPRERPGERRSKE
HEEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPREPSEREWTSPLTERQRDEQKS
GYDAPRRYAESRHPNPRRPEGPPSSGTVVHRKCPSPGGLDAPVPRFERERLSPLHQKDAA
DASPVPRFESPNSEHSDDGPLSLDAAPLPHPAAPPKSILKAPARGGPLPSVRQHGDSPGH
TPPHDGGHPPSRYDGPAHMGPARPHPPGRYEGGPGRYDDPSRFEGPGRFDGGAPHHNMDR
FDSHMTHGPMRGGDGLGRFDGPPHPQAPVRFQGPGPGHFEGPMQRFDAPPHFDNVAPGSG
PMGFQQQRPLRFENPQNQMGPMRFDGPGPMRFDGPRFDMPHQGGPPRYDCPTGQQGPPRF
GPQHNLQPPMRPMAPSLYDNPIPPQQNYNMAPQRFPEPMNPQFPAGPMAFPVQQNLQPAG
NFNLQPAPFNQPAAPFYNPAAPAVTMQQPVNMMNMNTPFLPQSSVPFRQQTPQVAPTENH
FGQVDVNDLLSKLISNGIIKPSQPDATATASNEVVVAPVAAPPAAVVEEEEEEEQEAEED
EDLPDLTSFTIDDMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAG
KVASKKITHRRWYYSLTDWIEFEEIADLEERAKSLFFEKENEEEVQKSQAAAKEKELPMV
KATKDQVGESCEICQEAFETYWVEEEEDWFLKDAVRVDDKNFHPSCFEDYKNTSSYLDVT
PSPNKLLADHPLSAFIKTEEEEEEETSCDVAAAASVKQEVDLEGSDLPEVKKEESDVLTE
PTDGAAAP
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgttgatccacggtggtgctgccgtagcttcccccgctggttctaagatg
gaggacgcctgcagagagtaccagtcctccctggaagacctgacgttcaacagcaagcca
cacatcaacatgctcaccatcctggcagaggagaaccttgacttcgccaaggatatcgtc
gctattattgaagcacaaatcagcaaggctccgactgcagagaagctgccagttttgtac
ttagtggattccatagtgaagaatgtgggaggagaatacctcgcagtgtttgctaaaaac
ctaatcacttcatttttatgtgtctttgaaaaggtggacgagaacaccaagaagtctctg
ttcaagctgcgctccacgtgggacgaggtcttcccgctcaagaagctctacgcgctcgat
gtccgcgtcaactcggtggactcggcgtggcccatcaagccgctgccgcccaccgtcaac
gccagcatccacgtcaaccccaagttcctcaagcagtctgagtcagagactccgtcctct
cggcccgtcaccactcctccggcggcccccgctccctctccgacccccccgccgccacct
gcagcgccgccgtcggccgctcccgcccccgttgcccctggcgccgccgtcagtcagtcc
agtctgacgcaggaacagctgatccgccagcagctgctcgccaagcagaaacaacttctg
gagctgcagcagaagaagatcgagctggagctggagcagaccaaagctcagctggcaggg
ggcttcgttctgcccacctcagtctccaccacaccttcatcttcatcatcttcatcggct
gcagcgctgaagctcagcagtcagaccgctccggtggttcgaccctggatccccccccag
accgaccccaagccgtccaccagagacccccgtctgaaccgctccggtcccccaaccgcc
ccccaccccaaagagcagtctgctgggaagaaagacggccccccctccacaggaagtccc
gctctgacgccggagaaacggccggcggagaaaccggtccgacccgacaaaactaggcag
ccgaggaaggagatccaggaggagaagaagtccaagtccccgtcccccctcgccaaaaac
ctgcaggtcaagaacaaacacggcgaagccgaagccccgaaatctgccgacggcaccaag
aaagaccctcgtctgaggaagcgtccgcaggagaagagcggcgaggcgaaggaggacgag
cagaaggagaagaagagatgcaacgataagaaagagagagaggacgcgctgcgggcgagc
gagccgccgcgctccaacaaacccaagctgctgaacggctccatgcccaaacacgacaga
gacgaggccaccgacaagccggagttcaaggccggcggtaacgcacgtacgcacgcacgg
aaacgcacgcgctcccgttcccgctcccgctcgcccgcctcctccccgaagaggaaggac
cgcagatcccctaaaagcagagcgaggagcagctctctgtctccgtcgccgtcgcacaaa
cccgggaaacctcgcaggatccgagccgacgagccgccgcatgggaagccgggccgggag
gaccggctcgcccccaagaagaaccaatcggagagcaggaggtcgaagaggccggcggag
gagcgacactccgaatccagagactctcactcgcctcgcggacacgacggagccgggaag
gacaaagacgctccgcaccgctggaggagcggctgggaggagaacaaacatctgaagctt
tcggaggaccctcatgtgaaacctgcacctcagagacacaaaccctacagcacgccgacc
cggcccccgaccccccgcacccccaaacaccggctcagcgtggacgccaacctgcagatc
cccgaagtcctcaactcagcgtctaagaaggatctgctgaggagggcgagtaagcgtctg
gagagcggcgagatctctcaggaggacttcctgaacatggcgcatcagatcaaacacttc
ttccagtatcaggaggagaagcagcagcaggaccacgacgacttcccctcaaagaagccg
ctgccgctgctggccgcggcccgcgacggcgtcggcgaggcggcgtactacgagcacaag
tccaagctgaggaagacgcaggtcacccaccgggcggccggggaggagtgggagggcgag
gagagtccggaggaggccgaggacgcggcgcaggacgagaagggcggacctgcacacctg
gcgacgcacaaatacaaccggccaccacgggagagaccaggtgagcggcggagtaaagag
cacgaggagccgcggccgccgctcggcccgatgatcgaggagtacaaccacgggaaggaa
ttccccacgctgaagtctctgccgggccttcgcttccgcaggagagccgacccgcgagag
cccagtgagcgggagtggacgtcgccgctgaccgagcgccagcgcgacgagcagaagagc
ggctacgacgcgccgcggaggtacgcagagtccagacacccaaacccccgcagacctgag
ggcccgccctcctccggcaccgtggtgcacaggaagtgtccgagcccgggggggctggac
gcgcccgttccgaggttcgaacgcgagcgcttgtctccgctgcaccagaaggacgcagcg
gacgcgagtcccgtcccgcgtttcgagagtccgaacagcgagcactcggacgacgggccc
ctgagcctggacgccgccccccttcctcatcccgctgctccccccaaatccatcctgaag
gctccggcccgcgggggcccgctgccgagcgtccggcagcacggcgactcccccggacac
acgcccccccacgacgggggccaccccccctcccgctacgacgggcccgctcacatgggc
cccgctagaccgcacccgccgggccggtacgagggcggccccgggcgctacgatgacccg
tccaggttcgaggggcctggcaggttcgacgggggggcgcctcatcacaacatggacagg
tttgacagtcacatgacacacggtccaatgaggggcggggacggtttgggccggttcgac
ggccctcctcaccctcaggcaccggtgaggttccaggggcccggcccggggcactttgag
ggcccgatgcagcgcttcgatgccccgccacactttgacaacgtggctcctggatctgga
ccaatgggcttccagcagcagcggccgctacgctttgaaaacccccagaaccagatgggc
cctatgaggttcgacggccccgggccgatgcgcttcgacggccccaggttcgacatgccc
catcagggcgggcccccgcgctacgactgccccaccggccaacagggacccccccggttt
ggcccccagcacaacctgcagccccccatgaggccgatggccccgtccctctacgacaac
cccatccccccccaacagaactacaacatggccccccagcgtttcccggagcccatgaac
cctcagttccccgctgggccgatggcgttcccggtgcagcagaacctgcagccggcagga
aacttcaacctgcagccggctcccttcaaccagcctgctgcccccttctacaaccccgct
gcccccgccgtcaccatgcagcagccggtgaacatgatgaacatgaacacgcccttcctg
cctcagagctcggtgcctttcagacagcagacgcctcaggtcgcccccacagagaatcac
ttcggtcaggtggacgttaacgatcttctgtccaaactcatctccaacggcatcatcaaa
ccctcgcagcccgacgccacggcaaccgccagcaatgaagttgtggtggcgccggttgct
gcgcctcctgctgcggtggtggaggaggaggaagaggaggagcaggaagcggaggaggac
gaagacctgccggacctcaccagcttcaccatcgacgacatgaaacagcgttacgagagc
gtggtgacgaagctgtactcggggaaccagtgctgtctgtgcagcatgaggttcaccgcg
gctcagaccgacatgtacgccgaccacctggactggcacttcagacagaaccacgccggc
aaggtggccagcaagaagatcacacaccgccgctggtactacagtctgacggactggatc
gagtttgaggagatcgccgacctggaggagcgagcgaagagtctgttctttgagaaggag
aacgaggaggaggtgcagaagagtcaggcggcggccaaggagaaagagcttcccatggtt
aaagcaaccaaagatcaagtcggagagtcgtgtgaaatctgtcaggaggcgtttgagacg
tactgggtggaggaagaggaggactggttcctgaaggacgccgtgcgggtcgatgacaag
aacttccatccttcctgtttcgaagattataaaaatacgtcttcgtatcttgacgtcacg
ccgtcgcccaacaagctgctggccgaccatccgctgagcgccttcatcaaaaccgaagag
gaagaagaggaggagacttcctgtgatgtcgccgccgccgcctcagtgaaacaggaagtg
gatctcgagggcagcgatcttcccgaagtgaagaaagaggagagcgatgttttaacggag
ccgacggacggagccgcggcgccgtga
DBGET
integrated database retrieval system
