Scomber japonicus (chub mackerel): 128372474
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Entry
128372474 CDS
T09718
Symbol
limch1a
Name
(RefSeq) LIM and calponin homology domains-containing protein 1a isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
128372474 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
128372474 (limch1a)
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
128372474
NCBI-ProteinID:
XP_053188538
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All DBs
Position
2:14878048..14908327
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AA seq
1055 aa
AA seq
DB search
MASQAAGRDTLNASRDEPESSEPQPSHPEPACQEAQKWIEAVTGKSFGEKDFRSALENGI
LLCELLSAIKPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLRGSQLFDPGDLQDTSIRA
NLKDSDCNRKLKNVLNTVFWLGKAASGCASYSGPNLNLKEFEGLLAQMKVETEEVVEISQ
KRNVRDSGYDCWDSERSESLSPPRHTRDNSLDSLDSFGSRSQHSPSPDVVNRGNNDGRGS
DSEADAPSRKPDVRKDDMLARRTSSSEARSSIPFNQFLPNRTNASSYIPTPRRKSHMEEG
EQRRMSRRVAFMSEDTESVSMSDMLNEDEVGHLPTLSQSRYERMQEQYSNFQDDDDQWQS
ELVRWKNRRRSASQELIKKEEERKRIEKRMKEEGSDCNKRKSIKTYKEIVEEKERREVEL
REAYKNAATPEEAAMILQRYALRFTISDATLDSLKLPRSTSKPKPDPDQVDKEHKPVHDS
EPAHDSETLDPLHEPESTVTMDQKHTKPEDMQIDITVQQETSDAVSSSPSAPKSPLPSVT
HLENMPPHSQDLHESETQPTESPSTHKQPIKEDAQPETKQTPPQTEVQSHTPTPVHPLPS
FPSVSARPVPLLAAKPYCQPRNSQSGHKPVKMDGLVRVNGEATEDSSVTIPPASLLHSPE
ENKDVPSKLKETEVPSKQTETEVPSKQTETEVPSKQTETEVPSKQMETEDPSKQTASTQE
MAAQLPPRQMEKPPSSSGSTISSLLGGRNCVIKTTIVTELTQTHVESLPLEVQSNGQMNG
TMGSVGKPAEEKKAQPVVSPCSMQEYSPTVTEGLEESNVTEQYQKEQEKLKKEWEKAQLE
VEEEERKHNEEERKILEETVTPLNPSGLFNQQSGQAGKTSSAPENNETQSRLVPLQQNGQ
KISTGNEDQHASKLHFFQDSPCDGEPSKKQELWKTSSLDRNPQLNQANAVKRSGSHDVVS
DKKQPSSSSPQPPSPSRCVSGKRLCTGCSQPLGKGAAMIIDTLGLFFHMQCFKCGVCEGQ
LGDATAGTDVRIRNGLLSCHDCYIASRGRGQPTTL
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggccagccaggcagctggtcgagataccctgaacgcctcacgggacgagccggagtcg
tcggagcctcagccgagccatcccgaaccagcctgtcaggaggcacagaaatggatagag
gctgtaacggggaagagctttggagaaaaggacttccgcagtgcgctggagaacggcatc
ctgttatgcgaactgctgagtgcaatcaaaccaggcctggtcaagaagatcaacagactg
cccacccccatcgccgggctggacaacctgtcagtcttcctgcggggctgtgaggagttg
ggcctgaggggctcacagctgtttgaccccggagacctgcaagacacttccatacgagcc
aacctcaaggactccgactgcaaccgcaagcttaaaaatgtgctgaacacagtgttctgg
ttggggaaggctgccagcggctgtgcctcctacagcggcccgaatctcaacctcaaggag
tttgaagggctgcttgcacaaatgaaggtggaaactgaggaagttgtagaaatctcacag
aaacgcaatgtgagagacagcggctatgactgctgggattcagagaggagtgagtccctc
tcaccaccacgacacacccgagacaactccctagacagtctggattcctttggctcccgc
tcacagcacagtccctctcctgatgtcgtgaatcgaggaaacaatgacgggcgaggcagc
gactcagaggcagatgcccccagcagaaagccagatgtgcgaaaggatgacatgttggcc
agacggacctccagcagtgaagcgagaagttcaattccctttaaccagtttcttcccaac
cgaaccaacgcaagctcctacatcccgactccgcgccgaaaatcacacatggaggaagga
gagcagaggaggatgagccgacgagttgcttttatgtctgaggacactgagagtgtgagt
atgagtgacatgcttaatgaggacgaggtggggcatttgccgacactgagccagtcacgt
tatgagcgcatgcaggaacagtacagcaacttccaggatgacgacgaccagtggcaaagt
gaactggttcgctggaagaatcgccgccgcagtgcatcacaagagctgatcaagaaggag
gaagagaggaagaggattgagaagaggatgaaggaggagggaagtgactgcaacaagagg
aaaagcattaagacctacaaagagatcgtggaggaaaaagagcgcagggaggtagagttg
cgagaagcctacaagaatgcagcaactccagaggaggcagccatgattttacagcgttat
gctctccgcttcaccatcagcgacgcaacactggacagtctaaaactccccagatccact
tcaaaacccaaaccggacccagaccaggtggacaaagagcacaaacctgttcatgactct
gaacctgctcatgactctgagacattggaccctctgcatgaaccagaatcaactgttaca
atggaccagaagcacacaaaacctgaagacatgcagatagatataactgttcaacaagag
acttcggatgctgtctcttccagcccctcagcacctaaaagccccctcccctctgtcaca
cacttagaaaacatgccccctcattcccaagaccttcatgaatctgaaacccaaccgact
gagtctccaagcacacacaaacaaccgattaaagaagacgcacagcctgaaaccaaacag
actccacctcagactgaagtgcagtctcacaccccaacacctgtacacccactcccctcc
tttccatctgtgtccgccagacctgttcctctcttggcggccaaaccttactgccagccc
cggaactcgcaatctggacacaaacctgtcaagatggacgggttggtgcgagtgaacgga
gaggctacagaggactcatcggtcaccattccacctgcctcccttctgcactcaccagag
gagaacaaagatgttccctccaaactaaaggaaacagaggtcccctccaaacagactgaa
acagaggtcccctccaaacagactgaaacagaggtcccctccaaacagactgaaacagag
gtcccctccaaacagatggaaacagaggacccctccaaacagactgcatccactcaagag
atggcagcgcagttaccccctcgtcagatggagaaacccccctcgtcctcaggctccacc
atcagctctctgctcggtggcagaaactgtgtcatcaagacgactattgtgacagaactc
acgcagactcatgtggaatcgcttcccctggaagtccaaagcaatggacagatgaatggc
accatgggatcagtcggaaaaccagcagaggaaaaaaaggctcaaccagttgtttcaccc
tgcagcatgcaagaatactcccccactgtcacagagggactcgaggagagcaatgtcact
gagcaataccagaaagagcaggagaagctgaagaaggagtgggagaaagcacaactggag
gtggaggaagaggagagaaaacacaatgaagaggagagaaagatcctcgaggagactgta
acgcccctcaatccctccggcctgttcaaccagcagtcaggccaggcagggaagacttca
tcagctccagaaaacaatgagacacagagcagactcgttcccctgcagcaaaatggccaa
aagatctccacagggaacgaggatcagcacgcttccaagctgcatttcttccaggattct
ccttgtgatggtgagccttcaaagaaacaggaactgtggaagacgtcctctctggaccga
aaccctcagctgaaccaggcaaatgctgttaaaaggtctggttcccatgacgtcgtctcc
gacaaaaagcagccctcctcatcatcacctcaacctccttcacccagcagatgtgtcagt
ggaaagagattatgtacaggttgttctcaacctctgggaaaaggagctgccatgatcatt
gacacactgggactgtttttccacatgcagtgtttcaagtgtggagtgtgtgaggggcag
ctgggtgatgccacagcagggacagacgtcaggattcgtaatggactgctgagttgtcat
gactgctatattgcatctcgaggcaggggacagcccaccactctatga
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