Scomber japonicus (chub mackerel): 128372512
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Entry
128372512 CDS
T09718
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128372512
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128372512
NCBI-ProteinID:
XP_053188582
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Position
14:complement(15590701..15620321)
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AA seq
1514 aa
AA seq
DB search
MEELTRQMDFSGGLSEENVVTETITSTTRLTSLPPKGTSGSNHRNMSSSAGGLSLEKNVL
TLNSGTYFSSSSVGVNTSNYSSSSGVYLGGDSSGGGDGGGSYIDGESYGSGGVVGSSGSG
GGSYHVSSVSKIRTSSSGWARRTQAAGSSRSLSPAFRERKTISSRSGGYDGSSSANSSPE
FTRKDYGNYCSSATRGRSESRESEIRTRLQSASPSPSRWMELDDVKKLLKGRSSSVSPTR
SFTTLPVPKKAGVETKTVSVASQSVSTSFGSGVTSAGFNTIDASGVYDNGLSSGQYGTGV
KSSQYDASVSSGQYGTGVKSSQYDASVSSGQYGTGVKSSQYDASLKSEQYSAGVRSGQYD
TSTLDALLPSFSWSTATLPSSSTTVVTGNASSYTYQAGNNNMFSPLSATSPSSLSVYGFQ
NNLAPTSGSVLTTNGHNVNAHLGGYGVQKNVSNGGGVVSTGVSTTTRSQTEDAYKKDYKF
LISEKENVPAKRDAEILILAKDSGKQFTTTGISVHLGGGSLSGDSIKKEKLISSYSETAP
LKTESGNTYYGSSGVVMKDKATYAEIHRDSGIFGGGGFCCCSDACCSWWKWLLGHLLLSL
LLLGLLFGLIALAEDVRKLKNRVATLEAASSSATAHASRLSCTNDTNANVDAGVSRGHID
LAALQIEIQNMMRSEMKSQEFRDLIASSVQVERGLPGLKGDTGAKGDPGFPGQPGPPGSI
GHPGIDGQKGQKGSQGDHGPEGPQGIRGREGPAGPRGEPLVLLTELLTYCYYFYYLVMQE
IQTAPGLSGQDGAKGSRGDQGHAGPPGLRGPAGPPGDAGLPGTPGLQGPPGIPGNPGQPG
AKGEMGQQGKIINAAGSASVGIPGPPGPAGPPGPAGHPGLSGPIGPAGLPGQPGRLLHPR
LKNKTKQIWIRYEAFRVSXMLCFSVLTGPKGPPGPPGRPGDSRQGPPGPPGPQGPPGYGR
PGPKGDKGDSSYASGSGVHYGQPGPPGPPGQKGETGSPGPRGYQGNCLSLSYVTSRGSIS
VTSGPPGPPGPPGPSGPPGAFSSSEMHHYINTYLSRNRQAGIPGPPGLPGPPGIPGTFSG
SIEDISTRIIAYIQRSGSSFGTGIQGPPGPPGPPGPGSGSLTVNALITMLQRDDVRRYMS
GPPGPQGPPGASGGISGTYNIQEIATYVFNIMNERGIARGVPGPPGPPGPAGAGGSSYTS
ATIDYSELIRNSDFCSWISSAVQHGPPGPPGVSGHPGPPGPQGPPGVSTSIMKGTGCRGY
SLEEIQRHLQGSSFRGLPGPPGPPGPQGPPGRQSGSVSYSGNFPRESIRAEVQEYLTSDN
VRRTIMGPPGQKGDRGEPGYSQSYVHSSSYPQGDPRYGSDRKDIDVSRLAERLDYSNVAL
KVTDYIKNQGLLQDYLVEGPWRSNVRAIQGPTGPPGPPGPPGYSRVIGTYGNITADLMDF
FRTHGTIPGPPGIPGPKGERGYPGPRGEKGDPGRQGLSGLPGTYTVQIPHRVQKRDTGNK
VVRHQLRRRQANIG
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttaacgagacagatggacttctcaggaggcttgtcagaagaaaatgttgtc
acagaaactataacttccacgaccagactgacttctctgccaccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcagtgctggagggctgagcttggagaagaatgtctta
accctgaacagtggaacttatttcagttcatcctctgtaggtgttaataccagcaactac
agctcctcctcaggagtttaccttggtggagactcctcaggaggaggtgatggagggggg
agctacatagatggagaaagctatggaagcggaggcgttgttggcagcagtggttctgga
ggtggcagttatcacgtgagctcggtgtcaaagatcaggaccagctcgtctggttgggcc
cggagaacgcaggctgccggctcatcacgaagtctgtcgccagctttccgggagaggaag
accataagcagtcgctcaggaggttacgacggaagttccagtgcaaattcctctccagaa
tttacacgcaaagattatggcaactattgctccagtgccacgcgagggaggagtgaaagc
agagagagcgagatcagaaccagattacaaagtgcctccccctcaccttccagatggatg
gagttggacgacgtgaagaagctgctgaagggtcgctctagcagtgtcagccctactcgc
tccttcaccactctgcctgttcccaagaaggccggcgtggaaaccaagactgtctctgtg
gcctctcagtcggtgtcaacttcgtttggctctggtgtgacgtcagctggattcaacacc
attgatgcatctggcgtgtatgataatggtctgagttcaggacagtacggtactggtgta
aaatcaagccagtatgatgctagtgtgagttcgggacagtacggtactggtgtaaaatca
agccagtatgatgctagtgtgagttcaggacagtacggaactggtgtaaaatcaagccag
tatgatgctagtctgaaatcagagcagtacagtgccggggtgagatcgggccagtatgac
acttccacgctggatgctctccttccatctttctcctggtccaccgccaccctgccctcc
tcctccaccacggtggtcactggcaacgccagcagctacacgtaccaggcgggcaacaac
aacatgttctcacccctcagcgccacctcaccctcgtccctgtcagtttatggctttcag
aataatctggcgcccacctctggcagtgtcctcaccaccaatggccataatgtcaatgct
catttgggaggttatggagttcagaagaatgtgtcaaacggtggtggtgttgtcagcact
ggagtctctacaaccactagatcccaaactgaagatgcatataagaaagattataagttc
ctgatctctgaaaaggagaacgttccagccaaaagagatgcagagatactaattttggcc
aaagacagtggcaagcagttcaccaccactggcatcagcgttcatttaggaggagggtca
ctttcaggagactccataaaaaaagagaagcttatttcaagctatagtgagacggcgcca
ctgaagacagagagcggcaacacttactatgggtcgtctggagttgtaatgaaagacaaa
gccacctatgcagagattcacagggacagcggcatctttggaggaggaggattttgctgc
tgctctgacgcatgctgctcctggtggaaatggctgctgggtcatctccttctctccttg
ctcctgctgggactcctctttgggctcattgcattagctgaggatgtgagaaagctgaag
aatcgagtggctactttggaggctgcatcctcatccgctactgctcacgccagtcgtctg
tcatgtaccaatgacaccaacgccaatgtggatgcgggtgtaagcagaggacacatagat
cttgcggctctccagattgaaatccagaacatgatgagatctgaaatgaagtcacaggaa
ttcagagatttaatagcatcctctgtgcaagtagaaaggggattgcctggacttaaaggg
gacactggagctaaaggagatcctggtttccctggacagccaggtcctcctggttcgatt
ggccacccaggtattgatggtcagaaaggacagaaaggaagccaaggtgatcatggaccg
gaggggccacaaggtatcaggggtcgtgagggccctgctggccccagaggtgagccattg
gttttacttacagagttgctgacatattgctattacttttattatctcgtaatgcaagaa
atacaaactgcaccagggctgtctggacaagatggtgcaaaaggctcaagaggtgaccaa
ggacatgctggaccccctggacttagaggtcctgctgggcctcctggagatgctggactt
ccaggaacacctgggcttcaaggaccaccaggaataccagggaatccaggacagccaggg
gccaaaggtgaaatgggtcaacaagggaaaatcattaatgcagctggctccgcctctgtg
ggtatcccaggacctcctgggcctgctggacctcccggccctgccggacatccaggatta
tcaggtcctattggtcctgctggtctgcctggccaacctggtaggttactgcaccccaga
ctcaaaaacaaaacaaaacaaatttggatcagatatgaagccttcagagtctcatagatg
ctatgtttttccgtcctcacaggtcctaaaggtccgcctggacctcctggacgtcctgga
gattcaagacaaggacctccaggaccacctggtcctcaaggtcctccaggttatggaaga
ccaggacctaaaggagacaaaggagattcaagctatgcatctggctctggagtgcattat
ggacaaccaggaccacctgggccacctggacagaagggagaaacaggttcacctggacca
agagggtaccaaggtaactgtctttctttaagttatgtcacttcacgaggctcaatctca
gtcacctcagggcctcctggtcctccaggtcctcctggcccttcaggcccacctggcgca
ttctcctcttctgagatgcaccattacatcaatacctatctaagcagaaacagacaggct
ggtattcctggacctccaggtctacctgggcctccaggaatccccggaaccttctcaggc
tctatagaggacatctccactcgcatcattgcatacatacaacgttcaggctcaagcttc
ggcactggtatccagggtcctccaggaccacctggccctcctggccccggctctggatcc
ctgactgtcaacgctctcattaccatgctacagagagatgatgtgaggagatatatgtca
ggaccgccagggccacaaggaccaccaggagcatcaggaggaatctctggcacttacaat
atacaggagatagctacttatgtcttcaacatcatgaatgagagagggattgctagaggt
gtgcctgggccaccaggccctcctgggcctgcaggtgcagggggctctagctatacttct
gctacaattgactactctgaattgataagaaattcagacttctgttcatggatttcctct
gctgtacaacatggtcctcccggtcctccaggtgtttcagggcatcctggccctcctggc
ccccaggggccaccaggagtctccacttcaattatgaagggaacgggatgtcgcgggtac
agcttggaggaaattcagcgtcacctgcaaggttctagcttcagaggtcttcctggccct
cctggtcctccaggtccacagggtccaccaggcagacaaagtggatcggtttcctacagt
gggaacttccctcgggagtctatccgtgctgaagttcaggagtatctgaccagtgacaat
gttcgtcgtaccattatgggacctccaggtcagaaaggagatcgtggagagccaggttac
tcccagagctacgtgcatagctcgagctaccctcagggtgaccctcgctatggttcagac
cgcaaagacattgatgtcagcaggctcgctgagagactagactactccaacgttgctttg
aaagttacagactacatcaagaatcaaggcctcctgcaggattatctggttgaaggtccc
tggaggtcaaatgtaagagctattcaaggccccactggtccacctggccctcctggacca
cctggctacagccgtgtcattggaacttacggcaacatcacagctgacctgatggacttc
ttcagaacccatggcaccatccccggtcctccaggaatccctggaccaaagggagagaga
gggtacccaggacccaggggagaaaagggtgatcctggacgccagggtttatcaggacta
ccggggacatacactgtacaaattccacaccgagtgcagaagagggataccggcaataaa
gtggttcgtcatcagctgcgtcgccgtcaagctaacattggctaa
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