Scomber japonicus (chub mackerel): 128372520
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Entry
128372520 CDS
T09718
Symbol
cdhr1a
Name
(RefSeq) LOW QUALITY PROTEIN: cadherin-related family member 1
KO
K16501
cadherin-related family member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128372520 (cdhr1a)
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Cadherin related
128372520 (cdhr1a)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
RibLong
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
128372520
NCBI-ProteinID:
XP_053188589
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Position
14:17446991..17458547
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AA seq
878 aa
AA seq
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MTXFFRMKNVKILHLPLLFVFVHACFAQADFAPYFYDNGPYSHNGNLALFSLSEDTAIGT
QIYCLNGTDPEGHEVSYGVSFDPGSREYFRVDPKSGNITLIEKLDREKQDSIDVLVSITD
GQSKVVERVTIFVMDTNDEKPEFQNLPAFIDVLETTAPGSSIYNVEAVDRDTGSGGSITY
YLQNPLPSLFAIDRHSGVLRIKSGEKLDFEKTKTHFITVIAKDGGGNFNGKEQFLSSSAT
LTVNVIDAQDTPPTFIGTPYFGYIYEISVPGSEIFTVVAKDGDVGSPNPIHYSFYDGDDG
VFSINKTTGCITLLTLPIYLKREIFNIKVKASEVSPEGRLMEYGLATVVIRVVDLNNNPP
TFYGENGPQNMFELTMYEHPPEGEILRGLKITVNDSDQGANAKFNLRLIGPGRMLRVVPQ
TVLNEAQVTILVEDSAAMDYEKHHFLTYKLLAVEIDTPERFSATADIVIHLLDTNDNAPK
FSSDYYIARIPENSPGGSNVVSVTATDPDSGPWGEVKYSIYGSGADLFFIQSVSGIIYTQ
PWASLDAEVKSKYNFYVKAEDAEGKYNLAEIFVTVLDLNDHPPAFNDNFLEKTMVIGAPV
KIEAVDDDAEVPNNVIEYAIMKSDPESNIFDINADTGEIMLKSYIKSMAIIQNITKQRDC
TWSLVVQARDQGQPSFSTTAVVKIDITEATQLKGGPLGSFLMQNRNKPLQILGMLAGVIS
LMVIITVMISTATFMRNKKSNRVLPNRRVRRRPRNQHNWNLKNPFKKQEHPEEKFRVQEE
EQEPEPEVVVENVNYNNNVTNVVRNWSPPPPPKAPGPCPPLPPPYIPGERQWTVPTISAA
VAVKPKKKPAMTRQDTVNKALVSELKMRLEQKRLLSHS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgacttgattctttaggatgaagaatgtaaagatcttacatttgccacttctttttgtg
tttgtgcatgcctgctttgcacaagcagactttgccccgtatttctatgacaatggaccc
tacagccacaatgggaacctggcactgtttagcctctcagaggacacagctattggtaca
caaatctattgcctcaatggcacagaccctgaaggccatgaggtgagctatggcgtttcc
tttgatcctgggtccagagaatacttcagggttgaccccaaatctggaaacatcacctta
attgaaaagctggacagagagaaacaagattctattgacgttcttgtcagcattacggat
gggcaaagcaaggttgtggaaagagtcacaatatttgtaatggacacaaatgatgaaaag
cctgaattccaaaacttgcctgcattcattgatgtattggaaacaacagcgcctggaagc
agcatctacaatgttgaggcagtggacagagacacaggctcagggggctccatcacatat
tacctccagaatcctctgcccagtttgtttgccattgacagacatagtggagtcctccgt
atcaaatctggagaaaagttggactttgagaagacaaaaacacacttcatcactgtaatt
gcaaaggatggtggtgggaatttcaatggaaaggagcagtttctgtcttcgtctgctacc
ctgacagtcaatgtgatagatgcacaagacacaccaccaacttttattgggacaccctac
tttggctacatttatgaaatctctgtgccgggatctgaaatattcactgttgttgcaaaa
gatggtgatgtgggaagcccaaatccaatccattactccttttacgatggtgatgatggt
gttttcagcatcaacaaaacaaccggttgtatcaccctgctgactcttcccatttatctg
aagagagagatctttaacattaaagtcaaggcatcagaagtaagtcctgaaggtagactc
atggaatatgggctggccacggtggtgatccgggtggtggacctgaacaataatccacct
actttctacggagagaacggcccacaaaacatgtttgagttgaccatgtacgagcatcca
ccagaaggagagatactccgggggctgaaaatcactgtcaatgactccgatcagggcgct
aatgctaaattcaacctaagactgattggaccaggacgaatgttgcgagtcgtccctcag
actgtgctcaatgaggctcaagtcacaatcttagtggaagactctgcagccatggactat
gagaaacaccattttctcacatacaagctacttgcagttgagattgatacaccagagaga
ttcagcgccacagcagacattgttatccacctcctggacaccaatgacaacgcacccaaa
ttctcctctgattactacatagccagaattccagaaaactcacccggtggctccaatgtg
gtgtcagtcacagcaacagacccagactcaggtccttggggtgaagtgaagtactctatc
tatggatcaggagctgacctgttcttcatccagtctgtatctgggatcatctacacacag
ccgtgggcaagcctggatgcagaggtgaagtccaaatataacttctatgtgaaagcagag
gacgcagaggggaagtacaacctggctgagatctttgtgactgtattggacctgaatgac
caccctcctgcgttcaatgacaacttcctggagaagaccatggttattggagcaccggtg
aaaatagaggcagtagacgatgatgcagaagtacccaacaatgttatcgagtatgccatc
atgaaatctgacccagaaagcaatatttttgacatcaacgctgacacaggggagataatg
ctcaaatcctacatcaagtcgatggccatcattcagaacatcaccaagcaaagggactgt
acctggtcgctggtggtgcaggccagagatcaaggccaaccgtccttcagcactaccgca
gtcgtcaaaatcgacatcactgaagctacccaactcaagggggggcctttgggatctttt
ttaatgcagaatagaaacaagccattgcaaatcctaggcatgcttgctggtgtcattagt
ctcatggtcattatcacggtcatgatctccactgcaacattcatgcgcaacaaaaagtcc
aaccgggtcctgcctaaccgacgtgtgaggaggagaccccgaaatcaacacaactggaac
ttaaaaaaccccttcaagaaacaggaacatcctgaagagaaatttcgagttcaagaagag
gagcaggagccggagccggaggtcgtcgtggaaaatgtcaactacaacaacaatgtcacc
aatgttgtgaggaactggtccccacctccaccacccaaagccccaggtccatgcccccct
ctaccaccaccctacatcccaggggagaggcagtggacagtacccaccatatcagctgct
gtggcagtcaaacctaaaaagaagccagcaatgaccagacaggacactgtgaacaaagcg
ctggtttcagaactcaagatgagactggagcagaagaggttgctgtcacattcatag
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