Scomber japonicus (chub mackerel): 128372650
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Entry
128372650 CDS
T09718
Symbol
pkd2l1
Name
(RefSeq) polycystic kidney disease 2-like 1 protein
KO
K04990
polycystin 2L1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sjo03037
]
128372650 (pkd2l1)
04040 Ion channels [BR:
sjo04040
]
128372650 (pkd2l1)
Cilium and associated proteins [BR:
sjo03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
128372650 (pkd2l1)
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128372650 (pkd2l1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Fer4_24
Phage_Nu1
MCM_C
EF-hand_7
Motif
Other DBs
NCBI-GeneID:
128372650
NCBI-ProteinID:
XP_053188741
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Position
14:25141488..25146546
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AA seq
780 aa
AA seq
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MKCLNNRADSHLTGQVECELDAMGNGAWVNQAYCGSPPPPSRAVSTIYNPQPIFQGSMDS
MYKLDTPSPFPEEPESADQSVVKKRRGCCSFIKGLWSTTLTENTSNNRELFVRTTLRELL
VYMVFLVDICLLTYGMTSSSTYYYTKAMTDLFVNTASENGVKFQSIGTMADFWSYAQGPL
LNGLYWTKWYNNQSMDNGDQSFIYYENMLLGVPRMRQIKTKNNSCKVHKDFQNEIIGCFD
VYNDKKEDDLSFGLINGTAWTYHTEKEIKGSSHWGLLTTYSGAGYYQDLSQTKEESSIIL
TELVDNLWLDRGTRVVFIDFSTYNANINMFCVIRLVVEFPATGGAIPSYQIRTVKLIRYI
TYWDYFILGCEMVFCLFILYYVVEEILELRIHKFAYFKSIWNILDIVVIMLAIVAIIFNI
FRTVKVDNLLGKLLQKPGIYADFEFLAFWQTQYNNMNAVNLFFAWIKVFKYISFNKTMTQ
LSSTLGRCAKDILGFAVMFFIVFFAYAQLGYLLFGTEVDTFSTFVKCIFTQFRIILGDFD
YDAIDRANRVLGPIYFVTYVFFVFFVLLNMFLAIINDTYSEVKEELSSQKDELQITDIIK
QSYMKTFMKLKLKNEKISDVQKALRSGSGEIEFKDFRETLKEMGHADHEISAAFSRFDCD
GNQILDQDEQDRMKTELEEKRDALCAELNNLGINYEKDLLEKPSMTSNDQKNHSSQTTVD
REQFIRLNRQVLHLESSVAGLTSRIELIMEKLGLQDKTKGNKSAGKLSVTKNDVSTKKKN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcctgaacaaccgcgccgacagccacctgaccgggcaggtggagtgtgagttg
gacgccatgggcaacggggcctgggtaaaccaggcctactgtggctcccctccaccccca
tcccgagccgtcagcaccatctacaacccacagcctatcttccagggctccatggacagc
atgtacaaactggacacccctagcccattcccagaagaaccagaatcggctgaccaaagc
gttgtgaagaaacgtagaggctgctgctcttttatcaaaggtttgtggagtacaacattg
actgaaaacacctcaaacaacagagaactctttgtccgaaccacattacgggaattactg
gtgtatatggtgttcctggtggatatatgtctcttgacatacggtatgaccagctcaagc
acctactattacactaaagccatgacggacctgtttgtgaatacggccagtgaaaatggg
gttaagtttcaatccattggcaccatggccgacttctggagttatgcccagggaccatta
ttgaatggcctctactggactaaatggtacaataaccagtccatggacaatggagaccaa
tccttcatctactatgagaacatgctgctgggagtccccaggatgaggcagatcaagacc
aagaacaactcctgcaaagtccacaaagacttccaaaatgagatcataggatgttttgat
gtctacaatgataagaaggaagatgatctcagctttggtctcattaatggcactgcctgg
acctaccacacagagaaagagatcaagggttcttctcactggggcttgctgacaacctac
agtggagcaggatactatcaggacctcagtcaaaccaaagaagagagctccatcatactg
acagaactggtggacaacctttggcttgaccgaggaaccagagtagtcttcatcgacttc
tctacttacaacgcaaacatcaacatgttctgtgtcatcaggttggtggttgaattccca
gcgactggtggagccatcccttcctaccagatacgaacagtgaaattgattcgttacatc
acctattgggattacttcatcctcggttgcgagatggtcttctgtttgtttatcctctac
tatgttgtggaggagattcttgaactgcgaatacacaagtttgcctactttaaaagcatc
tggaacatactggatattgtggtcataatgctcgccattgttgccatcatattcaatatc
ttccgtactgtcaaagtggataacttgcttggcaaactgctacaaaaacctggtatctac
gctgatttcgaatttctggcattctggcaaacacaatacaacaacatgaatgcagtgaac
ttgttctttgcatggatcaaggttttcaagtacatcagttttaacaagacaatgactcag
ctgtcctccacactgggtcgatgtgctaaagatatcttgggatttgctgtcatgttcttc
attgtgttctttgcctacgctcagctcggatatttgctctttggtacagaggttgatact
ttcagcaccttcgtcaagtgcatcttcacacagttcaggattattcttggagactttgat
tatgatgccatcgaccgtgcaaacagagttcttgggccaatctattttgtcacttacgtg
ttctttgttttttttgttctactgaacatgtttttggcgatcataaatgacacatactct
gaggtcaaggaggagctgtcatcccaaaaagatgagctgcagattactgatatcatcaaa
cagagttatatgaagacattcatgaagctgaaactgaaaaatgagaaaatatcagatgtt
cagaaggctctacggtctggatctggagaaattgaattcaaggacttcagagaaactctg
aaggagatgggacatgctgatcatgaaatttctgcagctttctcacgatttgactgtgat
gggaaccaaattctagaccaagatgaacaagacaggatgaaaacagagctggaagaaaag
agggatgctctttgtgccgaactcaacaatcttggaattaattatgagaaagatttactg
gagaagccttctatgacctcaaatgatcagaagaaccactctagtcaaaccactgtggat
cgggaacagtttataaggctgaacaggcaggttctccaccttgaaagctctgtggcaggc
ctcacatccaggattgagttgattatggagaaactggggttacaagacaaaactaaaggg
aacaaatcagcagggaaactatctgtgaccaaaaatgatgtgagtacgaaaaaaaaaaat
taa
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