Scomber japonicus (chub mackerel): 128372739
Help
Entry
128372739 CDS
T09718
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128372739 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128372739 (patl1)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128372739 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
128372739 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF3849
Motif
Other DBs
NCBI-GeneID:
128372739
NCBI-ProteinID:
XP_053188866
LinkDB
All DBs
Position
2:36977830..36992232
Genome browser
AA seq
823 aa
AA seq
DB search
MFRFQSLNEDCTLEEEDEGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDQLGGG
PGLVGGGGMGGESDLGGAEDSSSARLPPAAGNLPLPSLNFSSSSGLPRPDVEDRGGGGGG
GGDLAESLARLILDADPAIAGVGAAERPGPPPSLSALQGLDRSRVLPQPSPIPHPSQPHQ
HPHHPQHQLPPGPSTSGLAPSSMLSYQQQQHLMRRGTAPMGQMNSHSIWENNMGFGPVSV
TPGLVTHMEDSPLMSIIKEVGLPKQPPQGRNDEGRDLSERVPPPRSSSPVIGSPPVRAVP
IGTPPKQPMSHVMNHQIHHPTPVHVRAPVQHRYPPPFPERLSPNTLLNIANSPLCRGPFP
PGVGPVLSQIQRAQLLNSQVAGFPRGPAPPLLPGGGGFRPFFGGPPPPHGHRMGPPPPHG
PLNHAPPIRHNTTHLHPQHRRLLTQRMQSRGGDRGRIGGDRRSRDPYSNLMTQKEKEWVT
KIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKLEHTYRPV
QFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEV
QDFEKRFLHAPEEDREALLEQHKTNTMQLCNSLQEKEWDDRVSDEQCVMIMSVRKGKRLI
SRLLPFLPPPQAAAVVMAIARNLPALAKKDKQDQVLCWLVEPVSAVIQSLSSSALTDLLQ
ELQGNEGQLATVLLNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLS
VPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISALSR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccttgaatgaagactgtacgctggaggaggaagacgagggactg
atagaagaagaagatgaaatcgatcagttcaacgacgacacgtttggagccggggccatc
gatgacgactggcaggaggaacacaagcgcctcgccgagctcgaccagctgggagggggg
ccgggtttggtaggaggaggagggatgggaggggagtcggacttaggcggagctgaggac
tcatcctccgcccgtctccctccggccgccggcaaccttcccctcccctcactcaacttc
tcgtcttcctccggactgcctcgaccagatgtagaagatcgaggaggaggaggaggagga
ggaggcgacctggccgagtccctggccaggctgatcctggacgcggacccggccatcgct
ggggtcggggcagcagagagacccggccctccccccagcctgtctgctctgcagggcctg
gacagaagcagagtcctgccccagccatctcccatcccccacccctctcagccacaccag
catccccatcacccccagcaccagctgcctcctgggccctccacttcaggccttgctccc
tcctccatgctcagctaccaacaacaacaacacttgatgcgcagaggaaccgctcctatg
ggccagatgaactctcacagtatctgggagaacaatatggggttcggaccggtcagtgtc
acccccggactggttacacacatggaggacagtcctctgatgtctataataaaggaggtg
ggtctccccaaacaaccgcctcagggcagaaacgatgaaggacgagatttgtctgagagg
gtcccgcctccgcgctcctcttccccggtgattggctcccctccggtgagggcagtgcct
atagggacgccgcccaaacagccaatgagccacgtcatgaatcatcagatccaccacccc
acgccggttcatgtgagagccccggtccagcacagataccctcctcctttccccgagcgt
ctgtcacccaacaccctcctcaatatagctaactctccactgtgtcgcggtcccttccct
cccggcgtcggtccagttctgtctcagattcaacgggcccagctgcttaactctcaggtg
gcaggttttccccgaggtccagcgcctcctttgctaccaggcggcggcggtttcaggccg
ttcttcggggggccccctcctccgcacggccaccgaatgggcccgccgcccccccacggc
cccctcaaccacgcgccgcccatccggcacaacaccacccacctccacccccagcaccgc
cgcttgctcactcagcgcatgcagagccggggaggggatcgtggtaggattggaggggac
cggcgcagcagggatccctacagtaacctgatgactcagaaagagaaggaatgggtcact
aagatccagatgatgcagctgcagagtactgacccgtacctggatgactactactatcag
aactactatgaaaagatggagaaacgtcaggagagagagagagacagcagcaagaaggaa
cacaccaccaaactcatcactccacaggtggccaagctggaacacacctacaggccagtt
cagtttgcaggttctctgggtaagctgacggtctccagcgtcaacaacccccgcaagatg
atcgatgccgtggtgacgactcgcactgacgacgaggagaagagagagaagcaggtttgg
aataagaggcgacagatcctctacaccgttgaaaagatgtacagtttgcttctggaggtt
caagactttgagaaacgtttcctccacgcgccagaggaggacagagaagctctactggag
cagcacaaaaccaacaccatgcagctgtgcaactccctccaggagaaggagtgggacgac
agagtgagcgacgagcagtgcgtgatgatcatgtcggtgaggaagggcaagcgtctcatc
tccaggctgctccccttcctgcccccgccccaggccgccgccgttgtcatggcgattgcc
cgcaaccttccagctctggcaaagaaggacaagcaggaccaggtgctgtgctggttagtg
gagccggtgtctgcagtgatccagtctctgtccagctccgccctcacagacctgctccag
gagcttcagggcaacgagggccaactggccacagtactgctcaacaagttcggtgtgaca
ctgctgtatctgatcctgagtgaaggagagaggatgcagagctccgaccccaattgtcaa
ctcatggacgacaatcgatggactgagttggtgttttcggtgacgagggagctgctcagc
gttccctcctcttccctatcccctcccctcttcacgccccccaacctgctctccctcttc
tcacgctacgtcgaccggcagaggttggagctgttacaggacaagctacagatttctgct
ctgtccaggtag
DBGET
integrated database retrieval system
