Scomber japonicus (chub mackerel): 128373255
Help
Entry
128373255 CDS
T09718
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04517
IgSF CAM signaling
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128373255
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128373255
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sjo04812
]
128373255
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
128373255
Intermediate filaments
Intermediate filament-binding proteins
128373255
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
CAMSAP_CH
DYH2-5-8_CC
LPD22
SCAR_helical
BORCS6
DUF7854
Motif
Other DBs
NCBI-GeneID:
128373255
NCBI-ProteinID:
XP_053189520
LinkDB
All DBs
Position
14:2702658..2797106
Genome browser
AA seq
1269 aa
AA seq
DB search
MDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIV
DGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFT
TSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVD
HPDEKSIITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETEKMIEKYESLASELLEWIE
QTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQK
VYTPREGKLISDITRAWERLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLS
ENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAVVSVAKELEAESYHDIKRI
TARKDNVIRLWEYLLELLKARRLRLELNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKH
LLGVEDLLQKHALVEADISIQADRVKNVNSNAQKFASDTEGYKPCDPQIIRDRIAHMDFC
YQELSQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILSSEDYGKDLTGALRLLSQ
HKAFEDEMTGRAALLQQTIKQGDKLVANNHFGADKIKERIQDIQDQWAALERLSAVRKAR
LQEACNQHQFQADADDIDTWMLDVLRIVSSVDVGHDEFSAQALVKKHKDVAEEIGSYRPV
IDALHEQSRTLPDEKANSEEVQSRLAGIEERYKEVVELTRLRKQALQDALALYRMLSEAS
ACEVWIDEKEQWLNSMEIPEKLEDLEVVQHRFESLEPEMNNQASRVAVVNQVARQLIHSG
HPSEEKIKAQQDKLNTRWSQFRDLVDQKKDSLSSALGVQNYHLECNETKSWIKEKTKVIE
STQELGNDLAGVMALQRKLTGMERDLAAIEDKLGDLGKEAERLSTEHPDQSEAIKGRLAE
ITGVWEEMKDTMKNREESLGEASKLQQFLRDLDDFQSWLSRTQTAIASEDMPNTLAEAEK
LLAXHENIKNEIRNYEEDYQKMRDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWE
NRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTLEAAEAAIKKQEDFMTTLD
ANEEKISGVVDTGRRLVTDGNVNADRIQEKVDSIDQRHKKNRAAASDLLSRLKDNRDLQK
FLQDCQELSLWINEKMLTAQDMTYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKVREG
NRPLEAVSP
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggacggacgcatgctcatcaagctgctggaggtcctgtcaggagagaga
ctgccgaaacccacgaagggtcggatgcgtatccactgtctggagaacgtggacaaggct
ctgcagttcctgaaggagcagagggttcacctggagaacatgggctcccacgacatcgta
gacgggaaccaccgcctcacgctcggactcatctggaccatcatcctccgcttccagatc
caggacatcagcgtggagacggaggacaacaaggagaagaagtcggctaaagatgctctg
ctgctgtggtgtcagatgaagactgcaggatatccaaacgtgaacatccacaacttcacc
accagctggagagacgggatggctttcaacgctctcatccacaaacacagacccgacctg
atcgacttcgataagctgaagaaatcaaacgctcactacaacctgcagaatgccttcaac
ctggcggagcagcacctcggcctcaccaagctgctcgaccccgaagacatcagtgtggat
catcctgatgagaagtccatcatcacctacgttgtgacctactatcactacttctctaag
atgaaggctctgaaggtggaggggaagagaatcggcaaggttctggataacgccatcgag
acggagaagatgatcgagaagtacgagtctctggcgtcggagctgctggagtggatcgag
cagaccatcatcatcctcaacaacaggaagttcgctaactctctggtcggagtccaacag
cagctgcaggcgttcaacacctaccgaacggtggagaagcccccaaagttcacagaaaaa
ggaaacctggaagttcttctgttcaccattcagagtaaaatgagagcaaacaatcagaaa
gtttatactccaagagaaggaaagctcatctctgacatcacaagggcgtgggagcgtctg
gagaaggcggagcatgagcgtgagctggctctgaggacggagctgattcgtcaggagaag
ctggagcagctggcgagacgcttcgaccgtaaagctgccatgagagaaacgtggctgagt
gagaaccagcggctcgtctcccaggataactttggctttgatctccaggccgtagaagct
gccactaagaaacatgaagcgatagaaacggacatcgcagcgtacgaggagcgagttcag
gccgtggtctctgtggcgaaggagctggaggctgagagttaccacgacatcaaacgcatc
acggccaggaaggacaacgtgatccgtctttgggagtatctgctggagctgctgaaggct
cgcaggctgagactggagctgaacctcggcctacagagagtcttccaggaaatgctctac
atcatggactggatggacgagatgaagatgttgctgctctctcaggactatgggaaacat
ctgctgggggtggaggacctgctgcagaaacacgctctggtagaagctgacatctccatc
caagctgaccgagtcaagaacgtcaacagcaacgctcagaagttcgctagcgacacagaa
ggttataagccgtgtgatcctcagatcatcagagatcgtatcgctcacatggacttctgc
taccaggagttgagtcagctggcggctgaacgacgagctcgtctagaagagtctcgacgt
ctctggaagttcttctgggagatggccgaagaggagggatggatcagggagaaggagcag
atcttgtcctccgaggactacgggaaggatctgacgggagcgctgagactgctgagtcag
cacaaagccttcgaggacgagatgacgggccgagccgctctcctgcagcagaccatcaaa
caaggagacaagctggtcgctaataatcactttggagccgataagattaaagaacgcatc
caagacatccaggaccagtgggcggctctggagcgtctctcagctgtccgtaaggctcgt
ctacaggaagcctgcaaccagcatcagttccaggccgacgctgacgacatcgacacgtgg
atgctggacgttctgcggatcgtctccagcgtggacgtcggccatgatgagttctcggct
caggctctggtgaagaagcacaaggacgtcgccgaggagatcggaagctaccgacccgtc
atcgacgctctgcacgagcagtcccgcacgctgcccgacgagaaggccaactctgaggag
gtgcagagtcgtctggcgggcatcgaggagcgttataaggaagtggtggagctgacgcgt
ctcaggaagcaggcgctgcaggacgcgttggcgctctacaggatgctgagcgaagcgagc
gcctgcgaggtctggatcgacgagaaggagcagtggctcaacagcatggagatccccgag
aaactggaggacctcgaagtcgtccagcatcggtttgagagcctggagccggaaatgaac
aaccaggcctcccgcgttgccgtggtcaaccaggttgccaggcaactgatccacagcgga
catcccagcgaggagaaaataaaagcccagcaagacaaactcaacaccaggtggagtcag
ttcagagacctggtggaccagaagaaggacagtctgagctctgcgttgggcgtccagaac
taccacctggagtgcaacgagaccaagtcctggatcaaagagaagaccaaggtgatcgag
tcgacccaggagctgggcaacgacctggcgggcgtcatggctctgcagaggaagctgacg
gggatggagcgcgacctggccgccatcgaagacaagctgggagacctgggaaaagaggcg
gagcgcttgtccaccgaacacccggatcagtctgaggccatcaagggacgactggccgag
atcaccggcgtgtgggaggagatgaaggacaccatgaagaaccgtgaggagtctttgggc
gaggccagcaagctgcagcagttcctccgcgacctggacgacttccagtcctggctgtcg
cggactcagaccgccatcgcctccgaggacatgcccaacacgctggccgaggccgagaag
ctgctggccnagcacgagaacatcaagaacgagatccgcaactacgaggaggactaccag
aagatgcgggacatgggcgagatggtgacgcagggccagacggacgcgcagtacatgttc
ctacggcaacggctgcaggcgctcgacaccggctggaacgagctgcacaagatgtgggag
aaccgacagaacctgctgtcccagtctcacgcctaccagctgttcctcagggacaccaag
caggccgaagcgttcctcaacaaccaggagtacgtcctcgcccacaccgagatgcccacc
accctggaggccgccgaagccgccatcaagaagcaggaggacttcatgaccacgctggac
gccaacgaggagaagatcagcggcgtggtcgacaccggccgccgcctggtaaccgacggc
aacgtcaacgccgaccgcatccaggagaaggtggactccatcgaccagaggcacaagaag
aaccgagcagctgccagcgacctgctgagcagactgaaggacaacagagacctgcagaag
ttcctgcaggactgccaagagttgtccctctggatcaacgagaagatgctgacggctcag
gacatgacctacgacgaggccaggaacctgcacagcaagtggctcaaacaccaggccttc
atggccgagctgcagtccaacaaagagtggctggacaagatagagaaggtgagagagggg
aatcgccccctggaggccgttagcccgtaa
DBGET
integrated database retrieval system
