Scomber japonicus (chub mackerel): 128373306
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Entry
128373306 CDS
T09718
Symbol
atrnl1a
Name
(RefSeq) LOW QUALITY PROTEIN: attractin-like protein 1
KO
K24332
attractin
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
sjo04091
]
128373306 (atrnl1a)
Lectins [BR:
sjo04091
]
C-Type lectins
Others
128373306 (atrnl1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ATRN-LZTR1
Kelch_KLHDC2_KLHL20_DRC7
GBD_ATRN
Kelch_1
Kelch_3
Kelch_4
Kelch_5
Kelch_6
EGF_LMN_ATRN
Kelch_2
PSI
NANM
EGF_Teneurin
EGF_laminin
EGF_2
TMEM100
Motif
Other DBs
NCBI-GeneID:
128373306
NCBI-ProteinID:
XP_053189570
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Position
14:5162209..5520948
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AA seq
1177 aa
AA seq
DB search
CPNNCSGHGRCSTANSASGRVYCECEEYWKGEACDIPYCRNNCGSPDHGYCDLTGEKLCV
CNDSWQGPDCSLSVPSTEAFWVLPSIKPSAQSLGRASHQALVHSGLMWVVGGYSFNYSNY
HMVLNYNLESSTWDAVPVSNAPLYRYGHSLALYQDDIYMFGGKLEAGSANVTDELWVFNI
PRRTWSPWKPSXPPPPYALEGHTAHVVELADGEPVMLMFFGYSPIYSYVNKVQEYNIRSN
SWQVVSAGGAVVQGGYGHSSVYDEASGCVFVHGGYKALSNNKYGLVDHMYRYHVHTRTWL
ILRESGLARYLHSAVLLSGTLLVFGGNTHNDTSLSNGAKCFSADFLAYDIACDEWTVLPR
PGLHRDVNRFGHSAVVSNGSMYIFGGFSGLLLNDVLAYTPPSCKAFSDPDLCAASGPGLR
CHWVKGGCVAWQLKPPDETSSAPLCPPRSDSTDEQCFRFSDCASCTANTRGCQWCEDRKC
ISTSSNCTVSVRDSSRCKRREEQECFRLANCRSCXLNVNCQWEAQQQECQALPGQLCGEG
WHHVGEVCLRINSSRESYDNAQHYCKNLGGNIASLLTDKQVNFVLEELQKYQLQDKTLSP
WVGLRKINVSYWGWEDASPFTNTSLRWLPGEPNDSGFCAYLERAQVAGLKANPCTANTDG
LICEKPAGSPQSQSARPCRTPCAVRTSCANCTSQAMECMWCGSTQRCVDSSAYIISFPYG
QCLEWQTQDCTAQNCSGLRTCSDCLERAECGWCGDPSNTGRGVCMEGSYRGPLKPANAKT
GPRDRDRLRDRDMLLDQSLCSSDRGYNWAFIQCPACQCNGHSRCVNGTVCEHCGNLTAGT
HCQSCMPGYYGDPTNGGKCNACKCNSHANVCHVNTGKCFCTTKGIKGDQCQLCDSENRYL
GNPLRGTCYYNLLIDYQFTFSLLQEDDRHYTAINFMATPEQANKNLDMSINASNNFNLNI
TWSLSSTAGTISGEEMPIIARTNIKEHRDSFSCEKFNFRLHHNITFYVYVSNFSWPIKIQ
IAFSQHNSIMDLVQFFVTFFSCFLSLLLVAAVVWKVKQTCWASRRREQLMRERQQMASRP
FASVAVALEVGGDQEELLQAVPKPIAMEPCWGSRAGVLTVLLYLPRVPSGTPPPGQSGIA
IASALVDTSQQRVMDFKERGLGLKHRKHTVHHQGTCV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
tgccccaacaactgctcgggtcacggcagatgcagcacggccaactcagcgtcgggccga
gtgtactgcgagtgtgaggagtactggaaaggagaagcgtgtgacatcccgtactgcagg
aacaactgtggcagcccggatcacggctactgtgacctgaccggagagaagctctgcgtg
tgcaacgacagctggcaaggtccagactgctctctgtccgttccctccaccgaggctttc
tgggtgctgccgagcatcaaaccgtcggctcagtctctgggtcgggcgtcccatcaggcc
ctggtgcattctgggttaatgtgggtggtgggaggttactccttcaactactccaactat
cacatggtcctcaactacaacctggagagcagtacgtgggacgctgttcctgtcagcaac
gctcctctctacagatacggacactcactggctctctaccaggacgacatctacatgttt
ggcgggaagctggaggcgggatcggccaacgtgacggacgagctgtgggtgttcaacatc
cccagacgcacctggtcgccgtggaaaccgtccnnccctccccctccctacgccctggag
ggtcacacggcccacgtggtggagctggccgacggagaaccggtgatgctgatgttcttc
ggatactcgccgatctacagctacgtcaacaaagttcaggagtacaacatcaggtctaac
tcgtggcaggtggtgtctgccggcggcgccgtggtccagggaggttacggccacagcagc
gtttacgacgaggccagcggctgcgtgttcgtccacggcggatacaaggcgcttagcaac
aacaagtacggcctggtggatcacatgtaccgctaccacgtccacacgagaacatggttg
atcctcagggagagcggcttggcgcggtacctccactctgcggtgctgctgagcggcacc
ttgctggttttcgggggaaacactcacaacgatacgtcactcagcaacggagccaagtgc
ttttctgctgacttcctggcgtatgatatagcttgtgatgaatggactgtccttcccaga
ccagggctgcaccgagacgtcaaccgctttggacactctgccgtggttagcaatggctcg
atgtacatcttcggcggtttctccggtctgcttctgaacgatgtgctggcctacactcct
ccgtcctgcaaggccttctctgacccagatctgtgcgctgcgtccgggccgggactccgc
tgccactgggtcaaaggtggatgcgtcgcctggcaactgaaaccacctgacgaaacgtcc
tccgctcctctctgcccgccgcggtccgacagtacagacgagcagtgtttcaggttctca
gactgtgctagctgcaccgccaacactcgcggctgtcagtggtgcgaggacaggaagtgt
atctccacctccagtaactgcacagtgtcggtgagagactcgtccaggtgtaaacgcaga
gaggagcaggagtgtttcagactggcgaactgcaggagctgcntcctcaatgtcaactgt
cagtgggaggctcagcagcaggagtgtcaagcactgcctggccagctgtgcggagagggc
tggcatcatgtcggcgaggtctgcctgaggatcaactccagcagagagagctacgataac
gcacagcactactgcaagaacctgggaggaaatattgcttctttgctcacagacaaacag
gtcaattttgttctggaggagctacagaaataccagctgcaagacaagacgttgtctccg
tgggtgggcctgaggaagatcaacgtgtcgtattggggctgggaggacgcgtctccgttc
actaacaccagtctgcgctggttaccaggggaaccaaacgactcaggtttctgtgcttac
ctggagagagcgcaggtggcaggactcaaagctaacccctgcacggccaacacggacggg
ctgatctgtgagaaacctgctgggagtccacagagtcagagcgctcggccctgcaggact
ccgtgtgctgtgcggaccagctgtgctaactgcaccagccaggccatggagtgcatgtgg
tgtggaagtacgcagcggtgtgtcgactcctcggcctacatcatctccttcccctacgga
caatgtctggagtggcagacgcaggactgcactgcccagaactgttcgggtttgaggact
tgttccgactgtctggagagagcggagtgcggttggtgtggtgatcccagtaacaccggc
agaggcgtttgcatggagggttcctaccgagggcctctgaaacccgctaatgccaagact
ggaccgagagatcgggatagactgagagatcgggacatgttgctggatcagagtctctgc
tcgtctgataggggctacaactgggccttcatccaatgtccagcgtgtcagtgcaatggt
cacagcaggtgtgtgaacggcaccgtgtgtgagcactgcgggaacctgacggccgggacg
cactgccagagctgcatgcccggttactatggcgaccccaccaacggagggaagtgcaac
gcgtgtaagtgtaacagccatgccaacgtgtgccatgtcaacacagggaagtgcttctgt
accacaaaggggatcaaaggagaccagtgtcagctatgtgactcggagaaccgttacctt
ggcaaccccctcagaggaacatgttattacaacctgttgatcgattaccagtttaccttc
agtctgctgcaggaggacgaccgacactacaccgctatcaactttatggctacgcctgaa
caggccaacaagaacctcgacatgtccatcaacgcctcgaacaacttcaacctcaacatc
acctggtccttaagctcaacagctggaaccatctcaggagaggagatgccgatcatagcg
agaaccaacatcaaagagcatcgagacagtttctcctgtgagaagttcaacttcagactc
catcacaacatcaccttctacgtctacgtgtccaacttcagctggcccatcaagatccag
attgctttctcccaacacaacagcatcatggacttggtgcagttcttcgtcaccttcttc
agctgtttcctgtctctgctgctggtagctgccgtcgtttggaaagtcaagcagacctgc
tgggcttcacgacgaagagagcagctgatgagagagcgacagcagatggccagtcgtccc
tttgcgtcagtcgccgtggcgttggaggtgggcggcgaccaagaggagctgttacaggcg
gtgccgaagccgatagccatggagccgtgctgggggagcagagcaggtgttctgaccgtg
ttgctgtatctgcccagagtcccgtctggaacgcctccaccgggacagtctggtatcgct
atagccagcgctctggtggacacgtcacagcagcgagtgatggacttcaaagaaagaggc
ctcggtctgaagcaccgcaaacacaccgtgcaccaccaggggacctgtgtatga
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