Scomber japonicus (chub mackerel): 128373400
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Entry
128373400 CDS
T09718
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04010
MAPK signaling pathway
sjo04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128373400 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
128373400 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128373400 (nfkb2)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
128373400 (nfkb2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
128373400
NCBI-ProteinID:
XP_053189681
LinkDB
All DBs
Position
14:complement(79348..137849)
Genome browser
AA seq
917 aa
AA seq
DB search
MAGALRMSEAQFINVYDSELQLHLMPYEYIPPVDIKTEPYIPETAHGPYIQIIEEPKQRG
FRFRYECEGPSHGGLPGASSEKNRRTYPTVKINNYVGNARVEVQLVTHSEPPQVHAHSLV
GRHCTEKGTCTLDVGPNDLTASFSNLGILHVTKKGVVEILCRRLKEERKRQKGPHSSLSE
AEEASLLKEAKALGKVMDLNIVRLKFTAFLQDSNGGFTRALKPVVSNPIYDSKSPNASNL
KISRMDKTCGSVLGGDEIFLLCDKVQKDDIEIRFYEEDEDGGWEAFGDFSPTDVHKQYAI
VFKTPAYHSTEIERPVTVFLQLKRKKAGDRSDPKQFTYIPQVQDKEEVMRKKQKPLPHYE
PWRGGGGGGRGGGAGSFGGGGGGGGGGGAGFQFNQQMNGAAGGAGGFFSGSFTGFTAGGA
QMSSSAPQTQQQTGQTGQTGQMGQTGQMGQTGQTGQTGQSGSPLQQQLLQIAAALHSRAS
QSSRQTAAALLQYCSSGDARVLLAIQRHLVGIQDTNGDTPLHLAVIHQQTAVIHQLIHIL
LSSQQQAFINNPNHLRQTPLHLAVITRQVKVVEALLRAGADPSLLDKDGRSPLHLAALAG
DSATLRLLLAHLGERHAHLVNSTDYHGLQPLHLAVRKDGERCLRLLVEGGAKINAPEQKS
GNTALHLAVREHLFKVACTLITELKADVNACTFGGNTALHLAASLGSPTLCSMLIAAGAD
KNLENDEPLFISSSSDDDDDDDEDEPIREAASQPVNPRKRPAGGHTPLDLARCQKVKNLL
NSQSPKSSRHVSKKIRASSEEAETSGLDEDTLSRLVDVLSVEDVPWKKLAEKLGMLTLTH
LYQDSPTPCRHLLQHYKLGGGPVDGLVEALHSLGLKEGVRLLRNTERQDDKHSTDAHVDS
GFGSQPMEEEEPAVANQ
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggctggagctctaagaatgagtgaagctcagttcatcaacgtctacgacagcgagctg
cagctccatctgatgccgtatgaatacattcctcctgttgacataaagactgaaccttat
atacctgagacagctcatggtccatacattcaaatcatcgaggagcccaaacagagagga
tttcgtttccgttatgagtgcgagggtccgtcccacggtgggctgccgggggcgtccagc
gagaagaacaggaggacctacccaaccgtgaagatcaataactacgtggggaacgcccgg
gtggaggtgcagctggtgacgcacagcgagccgccgcaggttcacgctcacagtctggtc
ggacgtcactgcaccgagaaaggaacctgcacgctggacgtcggacccaacgacctcacc
gcatcgttcagtaatctggggattcttcacgtgaccaagaaaggagtcgttgagattctg
tgtagacgactgaaagaagagaggaagagacagaaaggcccccacagctctctctcagag
gcggaggaggcgtccctgctgaaggaggccaaggctttggggaaggtgatggatctgaac
atcgtgaggttaaagttcacggcgttccttcaggacagtaacggaggtttcaccagagct
ctgaaaccggtggtgtccaaccccatctacgacagcaagtctccaaacgcgtccaacctg
aaaatctcccgcatggataaaacatgcggctcggtcctcggaggagacgagatcttcctg
ctctgtgacaaagtccagaaagatgacatcgagatccgtttctacgaggaggacgaggac
ggcggctgggaggcgttcggagacttttctccaactgacgttcataaacagtacgccatc
gtgtttaaaacgccggcctatcacagcacagagatcgagcgtcccgtcaccgtgttcctg
cagctgaagaggaagaaggccggcgaccgcagcgaccccaaacagttcacatacatccca
caggtccaagacaaagaggaggtgatgaggaagaagcagaagccgctgcctcactatgaa
ccctggagaggaggaggaggaggaggaagaggtggaggagctgggagctttggaggagga
ggaggaggaggaggaggaggaggagcaggattccagtttaaccagcagatgaacggagca
gcaggaggagcaggaggcttcttctcaggaagcttcactggtttcactgcaggaggagct
cagatgtcaagctccgcccctcaaacacagcaacagacgggacagacgggacagacggga
cagatgggacagacgggacagatgggacagacgggacagacgggacagacgggacagagt
ggttcaccactacaacagcagcttttacagatagctgcagctcttcacagccgagcgtct
cagagctccagacagacggctgcagctctgttgcagtactgcagcagcggagacgctcgc
gtcctcctcgccatccagagacacctggtcggcatccaggacacaaacggagacacaccg
ctacacctggccgtcatccatcagcagacggctgtcatccatcagctgatccacatcctg
ctgagcagccagcagcaagccttcatcaacaaccccaaccacctgagacagactcctctc
cacctggccgtgatcacccggcaggtgaaggtggtggaggcgttgctgagggcgggcgcc
gaccctagcctgctggacaaagatggccgtagccctctccacctggcggcgctggccggt
gacagcgctacgctccgcctgctgctggctcacctgggagaacgccacgcccacctggtg
aacagcaccgactaccacggtctccagccgctccacctggccgtgaggaaggacggcgag
cgctgcctccgcctgctggtggagggcggagccaagatcaacgcacctgagcagaagagc
gggaacaccgcccttcacctggccgtcagagaacacctgttcaaggtggcctgcaccttg
atcacagagttgaaggctgatgtgaacgcgtgcacgtttggaggaaacacagcgctgcac
ctcgccgccagtctgggctcgccgaccctctgctccatgctgatcgctgcaggtgctgat
aagaacctggagaacgacgagccgctcttcatcagctcctcctcagacgatgatgatgat
gatgatgaggatgaaccaatcagagaagccgcctcacagccagtcaaccctcgtaagaga
cctgctggcggacacacacctctggacctcgccaggtgtcagaaggtcaagaatctgctg
aactcacagagtccgaaatcaagtcgacacgtcagtaagaagatcagagccagcagtgaa
gaggcggagacgtcgggtctggacgaggacactctgtcccggctggtggacgttctgagt
gtggaagacgttccctggaagaaactggcagagaaactgggaatgttgacgttgactcac
ctttaccaggacagtccaacgccctgcagacacctgctgcagcactacaagttgggtgga
ggtccagtggacggtctggttgaagctcttcattctctcggtctgaaagaaggagtcaga
ctgctgagaaacactgagagacaagatgataaacacagcacagacgctcacgtcgacagc
ggcttcggcagccagccaatggaagaggaggagccagccgtggccaatcagtga
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