KEGG   Scomber japonicus (chub mackerel): 128373620
Entry
128373620         CDS       T09718                                 
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03082  ATP-dependent chromatin remodeling
sjo03083  Polycomb repressive complex
sjo04110  Cell cycle
sjo04330  Notch signaling pathway
sjo04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    128373620 (hdac1)
   03083 Polycomb repressive complex
    128373620 (hdac1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    128373620 (hdac1)
   04350 TGF-beta signaling pathway
    128373620 (hdac1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    128373620 (hdac1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sjo03036]
    128373620 (hdac1)
Enzymes [BR:sjo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     128373620 (hdac1)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     128373620 (hdac1)
   HDAC complexes
    Sin3A-HDAC complex
     128373620 (hdac1)
    BRAF-HDAC complex
     128373620 (hdac1)
    REST complex
     128373620 (hdac1)
    SHIP complex
     128373620 (hdac1)
    MiDAC complex
     128373620 (hdac1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     128373620 (hdac1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    128373620 (hdac1)
  Chromatin remodeling factors
   NuRD complex
    128373620 (hdac1)
SSDB
Motif
Pfam: Hist_deacetyl Glypican RNA_polI_A34
Other DBs
NCBI-GeneID: 128373620
NCBI-ProteinID: XP_053189726
LinkDB
Position
15:23683202..23689094
AA seq 482 aa
MALSHGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
GEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTTGPKEEVK
TT
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggcgctgtctcatggaacaaagaaaaaagtttgctattactatgacggtgatgtggga
aactactattatggccagggccaccctatgaaacctcacaggatccgcatgacacacaac
ctcctcctcaactatggactgtacaggaagatggagatatatagaccacacaaagccagc
ggtgaagagatgaccaaataccacagtgacgactacatcaagttcctgaggtccatccga
ccggacaacatgtcagagtacagcaaacagatgcagagattcaacgtgggagaggactgt
cctgtgtttgatggtctgtttgagttttgtcagctctctacgggtggatctgtagccggg
gctgtgaagctgaacaagcagcagacagacatcgccatcaactgggccggcggactccac
cacgccaagaagtccgaggcctctggtttctgctacgtcaatgacatcgtcctcgccatc
ctcgagctgctcaagtaccaccagcgagtgctgtacattgacatcgacatccaccacggt
gacggagtggaggaagccttctacaccacagacagggtcatgaccgtctccttccacaag
tacggggaatacttccccggcaccggagacctgagggacatcggagctggaaagggcaaa
tactacgctgtgaactatccgctgagagacggcatcgatgatgagtcgtacgaagccatc
ttcaaacctatcatggctaaagtcatggagatgtaccagcccagtgctgtggtgctgcag
tgtggagctgattccctctcaggagacagactgggctgcttcaacctcaccatcaaaggc
cacgccaagtgtgtggagtacatcaaaagcttcaacctccccctgctgatgctgggcggc
ggcggctacaccatccgcaacgtggcgcgctgctggacctacgaaacggccgtggccctg
gactcctccatccccaacgagctgccctacaacgactactttgagtacttcgggcccgac
ttcaagctgcacatcagcccgtccaacatgaccaaccagaacaccaacgagtacctggag
aagatcaagcagcgcctgtttgagaacctgcgcatgctgccgcacgcccccggagtccag
atgcaggccatccccgaggacgccccccacccggacagcggggacgaggacgaggaggac
cccgacaaacgcgtttccatccgggctcacgacaaaaggatagcctgcgaggaagagttt
tctgactcggaggacgaggcagagggacagggagggggccgcaggaacgcagccaaccac
aagaaggccaaacgagtgaagaaggaggaagagaaggaaggagaggagaagaaagaagtg
aaagaagaagagaaggaggaagagaagatggatacaacaggaccaaaagaagaagtgaag
acaacttga

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