Scomber japonicus (chub mackerel): 128373814
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Entry
128373814 CDS
T09718
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 1 isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04145
Phagosome
sjo04814
Motor proteins
sjo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
128373814
09142 Cell motility
04814 Motor proteins
128373814
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128373814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128373814
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sjo04812
]
128373814
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
128373814
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
128373814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dynein_IC2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_EML
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SPT8
HSP33
Motif
Other DBs
NCBI-GeneID:
128373814
NCBI-ProteinID:
XP_053189988
LinkDB
All DBs
Position
15:19395405..19445978
Genome browser
AA seq
644 aa
AA seq
DB search
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKESESQQKTEATPEDSDLDRKRRETE
ALLQSIGISPEPPLVHPLQHLMLDSCYFHYLVPTPVSPSKSVSTPSETGSQDSADGGAAG
RTLQWDTDPSVLQLQADSELGRRMQRLGASKITQVDFLPKEVVSYCKETQTPLTAHLSEE
EEEEDEELMEAKPGPESEQQDEDDNKETKEVLRELTEEERQQILHSSEFQSFFDCSIRVM
ERALAEDGDIFFDYSGRDLEDKEGDLAGGSSLSCSRLFYDEHWSKHRVITCLDWSPQYPE
LLVASYNNNEDAPHEPDGVALVWNIKFKKNTPEYIFHCQSPVVSVGFARFHPNLVVGGTY
SGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGRMCSWSLD
MLSQPQETMELVYNKSKPVAVTGMAFPTGDVNNYVVGSEEGTVYTASRHGSKAGICEMFE
GHQGPVTGISCHNAVGTVDFSHLFITSSFDWTVKLWSTKHNKPLYSFEDNADYVYDVMWS
PVHPALFAAVDGMGRLDLWNLNNDTEVPTASVTIEGASALNRVRWSSGGKEVAVGDSEGR
VWIYDTGELSVAHSDDWARFARTLMEIRANRADGEEEGPMELAS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacaaaagtgacctaaaagcagagctggagcgcaagaagcagcgcctcgcccag
atcagggaggaaaaaaagagaaaagaggaggagaggaagaagaaagagtcagagagccag
cagaagactgaggcaaccccagaggattcagacttagaccgtaagcgcagggagactgag
gccttgctacagagtattgggatttcaccagagcctccactagtccatcctctgcagcat
ttaatgttagactcatgttattttcattatttagtcccgacccctgtgtccccctccaaa
tcagtgagcacgcccagtgagacggggagccaggattcagctgatgggggagcagcaggc
aggactctgcaatgggacacagacccctctgtgctgcagctgcaggctgattctgagctc
gggcggaggatgcagaggctgggggcctccaagatcacacaggtagacttccttcccaaa
gaggtggtctcttactgcaaggagacacaaacgccactgaccgcccacctatctgaagag
gaggaggaagaagatgaggagttgatggaggcaaagccaggccctgaatcagagcagcag
gacgaagatgacaacaaggaaaccaaagaagtgctgcgggagctgacagaagaggagaga
cagcagattcttcactcttctgagtttcagagtttctttgactgcagcatccgagtgatg
gaaagagctctggctgaagacggtgacatcttcttcgactacagcgggcgagacctggag
gacaaagagggagacctggcaggcggctccagtctgtcctgcagtaggctcttctatgat
gaacactggtcgaaacatcgtgttattacctgtcttgactggtctcctcagtatcctgag
ttgcttgttgcctcctataacaacaacgaagacgctccccatgaaccagatggtgtcgcc
ctggtgtggaacatcaagtttaagaagaacacaccagagtacatctttcactgtcagtct
ccagtagtgtctgtgggattcgccaggtttcatcccaacctggtggtggggggaacttac
tcggggcagatcgtcctgtgggataaccgcagtcaccgtcggacccctgtccagaggact
cccctgtctgctgctgcacacacccaccctgtgtactgtgtgaatgtggtcggcacgcag
aatgccaacaacctgatcacggtgtctacagacggcaggatgtgctcctggagtctggac
atgctctcccagcctcaggagaccatggagctggtgtacaataaatccaaaccggtggcg
gtgacaggcatggctttccccacgggagacgttaacaattatgtggtggggagtgaggag
ggcactgtgtacactgcatccagacatggcagtaaggcaggtatctgtgagatgttcgag
ggccaccaggggccggtgacaggtatcagctgtcacaacgcagtgggcaccgttgacttt
tctcaccttttcatcacgtcgtcctttgactggactgtcaaactctggagcactaagcac
aacaagcctctgtactcttttgaggacaacgctgactatgtgtatgacgtcatgtggtcg
cccgtgcaccctgcgctgtttgctgccgtggacggcatgggccgcctggacctgtggaac
ctcaacaacgacactgaggtgccaactgccagcgtgactatcgaaggtgcctcagcgctc
aacagggtccgctggtcatcaggagggaaggaggtggctgtgggtgactcagagggccga
gtctggatctatgatactggagagctgtcggtggcccacagtgacgactgggcgcgcttc
gcccgtaccctgatggagattcgtgctaaccgggcagacggcgaggaggaggggcctatg
gagctggcttcatag
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