Scomber japonicus (chub mackerel): 128374083
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Entry
128374083 CDS
T09718
Symbol
col8a2
Name
(RefSeq) collagen alpha-2(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
sjo
Scomber japonicus (chub mackerel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
PA14
BclA_C
Motif
Other DBs
NCBI-GeneID:
128374083
NCBI-ProteinID:
XP_053190303
LinkDB
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Position
15:20472057..20479085
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AA seq
688 aa
AA seq
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MLVTMLLSVACMLLMLGGRALAGGYPPVPHMKYMQPMMKGPIGPPFREGKGHYIDMPPMM
EVKGEPGPQGKPGPRGPPGPSGLPGKPGLGKPGLNGQPGPQGPPGFPGIGKPGLPGLPGK
IGLKGMPGLNGEVGPRGEPGPRGPPGHPGLPGPAGLSLNGKPGLPGIRGPAGSRGEPGLK
GLAGPPGDRGFKGDNGNGKPGAPGIRGPPGLKGSAGQTGFPGVGKPGPKGLPGAPGLKGD
NGLPGDRGEPGEAGSPGLQGLPGPIGLGKPGLDGLPGVPGPLGPKGEPGLRGAPGFPGTP
GYGKPGLGGPKGDKGNIGLPGFPGDKGDQGMVGPIGESGLDGQPGPQGLQGPMGLPGKHG
IPGLKGELGPQGPPGLPGLRGDQGPSGISGKPGIPGDKGIPGLHGPIGKPGPKGEAGHIG
IPGNPGLTGSPGPKGETGFMGTTGPRGQSGIPGLQGPMGPMGPQGVPGLKGEPGIPGSPG
LGKFGEKGAIGPQGPPGKPGTAGLNGNPGLPGPPGPPGPPGNGQTVVAGPTDSELEGDEV
PGDRKGPAYSQVPLSASVAPAFTAILSTPFPPSGMPIKFDRTLYNGQNAYSAATGMFTAP
ISGVYYFAYHMHVKGTSLWVALYKNNVPATYTYDEYKKGYMDQASGSAVLELKEGDQVWV
QMPSDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaccatgctgttgtctgttgcctgtatgctactgatgctgggggggcgtgct
cttgctggaggctatccccccgtaccccacatgaagtacatgcagcccatgatgaaaggg
cctattggaccccctttccgagagggcaagggacattacattgatatgccacctatgatg
gaagtgaagggggaaccaggaccccaagggaaacctggaccaagaggcccccctgggcca
tcaggacttccaggaaaacctggactggggaagccaggtctcaatggccagccaggccct
caggggcctcctggctttccaggaattggcaagcctggacttccaggtcttccaggaaag
attggactaaaggggatgccagggcttaatggcgaggttggtccccgtggtgaaccaggt
cctagaggtcctccagggcatcccggcctccctggcccagctggcctatctctaaatgga
aaacctgggcttccaggtatcagaggccccgctgggtcacggggagaaccaggattaaag
ggccttgctggcccaccaggtgaccgtgggtttaagggtgataatggaaatgggaagcca
ggagctcctggtataaggggtccacctgggctaaaaggcagtgcaggacaaactggtttt
ccaggtgtaggcaagcctggaccaaaaggtttgcctggagcacctggtcttaaaggtgat
aatggactcccgggagatcgaggagaaccaggagaagctgggtctccaggtctacaaggt
ttgccagggccaattgggttagggaagcctggactggatggactgccaggagtaccaggt
ccactaggtccgaaaggtgagccagggctcagaggtgctcctggatttcctgggactcca
ggctatggaaaacctggtctaggtgggccaaaaggagacaagggcaatattggtttgcct
ggtttcccaggggacaaaggcgatcaaggaatggtgggcccaattggggagtcaggcctt
gatgggcaaccaggaccacaaggacttcaaggcccaatgggactcccaggaaaacatggc
attccaggactgaagggagagctggggccccagggtcctccaggactgcctggcctcaga
ggtgaccaaggcccgagtgggatctctggaaaacctggtatccctggggacaaaggtatc
cctgggctgcatggtcctattggaaaacctggacccaaaggtgaagcagggcatattggc
atacctggtaatcctgggctgacaggttctcctgggccaaaaggtgagacagggtttatg
gggacaacaggtcccaggggtcagtcaggtattcctggtcttcaaggccccatgggtccc
atggggccacaaggtgtccctggcctgaagggtgaacctggaattccagggtctccagga
ctgggtaagtttggagagaagggagctattggtccccaaggtcctccagggaaaccaggc
actgctggacttaatggtaaccctggcctacctgggccaccagggcctccaggtcctcca
ggaaatggccaaacagttgttgcaggtccaacagattcagagttggaaggggatgaagta
ccaggggacaggaaagggccagcatacagtcaagtcccactctctgcctctgtagcacca
gccttcacagccatcctcagcacacctttccctccctctggcatgccaatcaaatttgac
aggaccctgtacaacgggcaaaatgcctacagtgcggctactggcatgttcactgctcct
atatctggtgtctactactttgcttaccacatgcatgtaaagggaactagcctgtgggtg
gcactgtacaagaacaatgtaccagccacttacacctatgatgaatacaagaaaggctac
atggaccaggcgtcgggaagtgctgtcctagagctgaaggagggtgaccaggtatgggtc
cagatgccttcggatcaggcaaatggcctctattccaccgagtacatccactcctccttc
tcaggattcctgctctgtcccacataa
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