Scomber japonicus (chub mackerel): 128374142
Help
Entry
128374142 CDS
T09718
Symbol
cica
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128374142 (cica)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128374142 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_Cic_C
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
128374142
NCBI-ProteinID:
XP_053190383
LinkDB
All DBs
Position
15:7672095..7727332
Genome browser
AA seq
2533 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGVGDAPEGGEKRDSDGNRDRSRSPQNQTASSSFSSNS
HSDSQADSIRARDTSDGEGLHREGLSETTVSLVMDSGKLLTSSDDRSGRSVLSGGSHSDS
SGSSCSNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCLSNTAGNHSHPASSTPPP
LLLSSHNQGSTGSGSDISISQPDGNGQSRSLMADFHSRNTGREAPQDNSPGPPTLSLGGG
ESERPVRVEGVRDGERISPSPLPRCSSTDTASEHSADLEVVSDAHTITPMSTHAPTSLPD
ALSDALAKGMKNQRVLARQLRRRSDEEAGGERIDEGRISDLVFRAGVVRKVSGEYGSLEV
QLNGEKTLCRYPYRHDSPSGVVDIILDAPPPGVHPIPIGTRVCVPYGNEEGSEGQWQWYR
EGVVTQVDTHPAVANRYRVLLSEERLPAVGEEEDGRATAGATQAVWVSRQTLRLLVPPWD
LDLPSGGGREVEEGVREKEREQDDREEIDVEQEVCRLSRGMAPVVGSVSGRDIPYPGMVP
VSSTSVHNITSLVTPTSVLSMAPGREWEIDKDLERERDLQRKQERERERERERENNAKQQ
QQQQQQQQQQQQQLHQYMPLTPEEDMEVSHFSMGPIGGIIPGAKPMGVPQHRHIVSKPPP
GYLNHPLSVVRGIGIPSAHLTLNPHPPPSPVLLGLDPVTAVITAPQLPPLPPMSSSSASS
SRGEKGSGGGSSGGGAGGGGGSGSGSTSSSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKK
FNGKQWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGGRERGGASSTGTLTPSDLR
LGGGRASSEFDWDETSRESSEASSRGADSRPRLVLPSLLPQDLSRFDFDECEAATMLVSL
GGSRSGTPSYSPISNQSPFSPTPSPSPSPLFGFRPANFSPITAPASLTPRRHRQLSGTKM
GTPGTERERHLSGIVPTFQTNLTFTVPMSPSKRKLDTHPPPPLPTVQDYQTKPEQQQLSV
GVGVMGDPNLGHSPAAFRVLSPQSQSTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPT
PQSPLPQEPSPRRIVPLRDSPVIVRNPDVPLAKFSDGPLGRRERSRSREHNQPQHAAPPG
LQAPVPINGATTNGAVLLRNPTSTLVLVTSSSSLTPATAGHASLSSSSIPGSMSTSVGSV
LSSSGSGGRERERKPEGHQEGSGGSLPQPVACHPTPTALLPLILPAESPHPAPRKQIIMG
RPGTVWTNVEPRSVPVFPWHSLVPFLEPSQPGAAAQPADGQQLVNQGKEPRCGVALVSDG
GRTTGPPDLERGSPSCPPPPTNDNPPAERGGADSETESDTDDPFSPGVANDPAPSTGTMK
RRTQSLSALPKDGDRKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWW
YALGPNEKQQYHDLAFQVKEAHFRAHPDWKWCNKDRRKSLSEGRGTPKESRERSMSESID
PHTESQVLEGKVGSSGWPMGSERRGGPFGGQHPRPRAFSQSAVHTLEQRERERDLEKEEG
ASLFRNRPPPQMYQGGASEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDS
DEDEPDGQHGFQPVARSSLPSSSPPSPHSDSTSATGNSGGSGEEEKRGADAGEEGNEGGS
IREEAAATGGEAGSGGGQGFSSLSIAGSASSTQAPLAYTQQGGTQLLGAVRMAPTMVTNA
VRPIASTPIPIASKPAEGAVTLSSLPQDKKAALLIGSSGPQQLPINAGGGYPSSSSSSSS
SSSLVQSVVTPIGSSGLVTSLVLGGGSSFPAAQPVQLLTTQPLPQHAQTPLPVIQXQLRP
TATSSLTPPKPLAQVQYILPTDSPSSPLLTQQQILSLPTNAALANVSPGTRVQTQSPVLQ
SKMLVPMATVRTGSTPPHPSISLVAPPLPVQNGPATGNKIIQIAPMPVVQTNVHXGSAAA
LHPGSPFPVSMATVMAPGAAPPQTVLLTSPPTRITYVQSSPGVTTAMPQQAPPPSGPAYL
PSSLATLGFTAIAPAGQTLVQPIVGQPPLLAPAPPLSCQSQTPTGQASATAGRQVLTAIY
PAPTVPLATGVVSMTTVPPSVAAPAQDVLNPSSPLATGAQGSAAATPQPSAAAAAAAVLE
PKLEVKIERDLDALTEEEGMSSCALNSSSCMSNATAAKIEEDIVHHIKEENMRDGYCRER
RSDMDGERERAMKENSDKKSSREMDREDHSMGDSSKEAGPRSPPPPPPSGLDPPPPPPAE
REPASSSSKKIKFRPPPLKKTPDSVLSEMYFEERFAELPEFNPEEVLPSPTLQSLATSPR
AILGSYRKKRRNSTELELTAEDPSSPRRKTRRLSSCSSEPNTPKSAAKCEGEIFTFDRPG
TEGEDLLGDLDRVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATAAFQARYSDTFPTKV
CLQLKIREVRQKIMQTATPGAPEPGGSIEANPAPSHSSSFNQSAREDGGAEQQQQQQQGD
RGRSPEEPNSEGS
NT seq
7602 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgataaaaaagcagggccgacgctctcccccctccacgcgggccaaagggggg
aagcgtcgtggagtgggggatgcccctgaaggaggggagaagagagactcagacgggaac
agagacagaagcagatcgccgcaaaaccagaccgcctcctcctctttttcatctaattca
cactcagactcccaggcggactcaatcagagcgcgggacacttcagacggggaaggacta
cacagagaagggctgtcagagacgacggtatcgcttgtgatggattctgggaaattgttg
acatcttcggatgataggtcagggaggtcggtgttgagcggtggcagccacagtgatagt
agcggtagcagctgcagtaacagtagtacaccgagcgccaacaacagccccaaccccgcc
tccagtcgcaagacagccaccttcaaagcccgcgttcccaagaagaagtacacatccgaa
cactgcttgtctaatactgctggtaaccatagccaccctgcatccagcacgccccctcct
ctacttctgagtagccacaatcaggggtccacaggttcaggaagtgacattagcatctca
caacctgacggcaacggtcaaagtcgaagcctgatggccgatttccacagcaggaacact
ggcagggaagcacctcaggacaactccccgggacccccgaccctgtcgctggggggaggc
gagagcgaacggccggtaagagtcgaaggggtaagagacggggagcggatatcacccagc
cctttaccccgctgctcttcgacagacaccgccagcgagcactcagctgacctggaggta
gtcagcgacgcgcacacaatcacgccgatgtctacacacgcacccaccagtctccctgat
gcactatccgacgccctggccaaagggatgaagaaccagcgtgtccttgcccgccagctc
aggagaagaagtgacgaggaggcgggaggagaaaggattgatgaagggaggatttcggac
ttggtgttccgggctggcgtggtccgtaaggtcagcggtgaatacggaagtctggaggta
caactaaatggggagaagacgctgtgtcgttatccgtatagacatgacagcccctcaggg
gttgtagacatcatcctagatgctccgccacctggtgttcacccaataccaataggaacc
cgcgtctgtgtaccttacggcaacgaggagggcagcgagggacagtggcagtggtaccga
gaaggcgtggtgacccaggtggatacacatccagcagtggccaatcgttaccgcgtcctg
ttgtccgaggaaagacttcccgctgtgggtgaagaagaggatggcagggctacggctggt
gctactcaggcagtctgggtgtcccgacaaacacttcggctcttggtgccgccatgggac
ctggatctgccgtctggaggaggacgggaggtggaagagggcgttagagagaaggaaaga
gagcaggacgacagggaggagattgacgtggagcaggaggtgtgtcgtttgagccgaggg
atggcacctgttgtgggatcagtgtcagggagagatattccctacccaggcatggtcccc
gtttcctccacttcagtccacaacatcacttctctagtaaccccaacctcagtcctcagc
atggctcctggccgagagtgggaaatagacaaagaccttgagagggagagggacctccag
cgaaaacaggaaagagagagggaaagagagcgagaaagggagaacaatgcaaagcagcag
caacaacaacaacaacagcagcagcagcagcagcagcagctccaccagtacatgccactc
acccctgaggaagacatggaggtgtcccacttcagcatgggccctataggggggattata
cctggggccaaacccatgggagttcctcaacaccgccacattgtctctaagcccccaccc
ggctacctcaatcaccccctgtccgtggtgcggggcatcgggatcccctctgcccacctc
accctgaacccccacccccctccttcacctgtcctgttaggcctggacccagtaactgca
gtcatcaccgcccctcagctcccccctctccctcccatgtcctcttcctctgcatcatcc
tccagaggagagaagggctcaggcggaggttcttctggtggaggagcaggtggtggtggt
ggatctggatcaggttcaacctcctcctcttcctcacgttcccgcaccccactgacagct
gcccagcagaagtacaagaagggagatgtggtgtgcacgccaacaggcatccgcaagaag
ttcaacgggaagcagtggaggaggctgtgctcgcgggagggctgctccaaagagtcacag
cgccgaggatactgctccagacacctctccatgaggaccaaggagatggaggccagcgga
ggcggccgggaacggggtggagctagcagcacaggaaccctgaccccatctgacctccgg
cttggcggagggcgagccagctcagagtttgactgggatgagacatcacgggaaagcagt
gaggccagcagccgcggagcagattcccgaccacgcctggtcctcccctccctgctcccc
caggatctgtctcgctttgactttgatgagtgcgaggcggccaccatgcttgtgtccctg
gggggctcccgttcaggcacaccctcctattccccgatatctaaccagtcgcccttctcc
ccaacaccatcaccctcgccctctcctctctttggcttccgcccggctaatttcagcccc
atcaccgctcccgcctcgcttaccccgcgccgccatcgccagctcagtggcactaaaatg
ggaacgccaggcaccgaacgagaacgccacctgtcgggaattgtgcccacttttcagacc
aacctcacgttcacagtgcccatgagccccagcaagaggaagctggacacgcacccacct
cctccactgcctacagtccaggactaccagaccaaacctgagcagcagcagctgagtgta
ggggtaggggtgatgggagaccccaaccttggccacagccctgctgccttcagagtcctg
tccccccaaagtcaatccacaaccccctcttcgctttccttccccaggccacgtagtgcc
accagcaggccaccatcatctgctgcctccacacctccgcccatgctggtctctcctact
cctcaatctcctttgccccaggaaccctctccacgccgcattgtacccctccgcgattcc
ccagtcattgtccgcaacccagatgtccccctggccaagttctccgacggcccgttagga
aggagagaaaggagcaggtccagggagcacaaccagccccaacacgcagctccacctggc
ctgcaggcccccgtcccgatcaacggagccaccaccaacggtgctgttcttctgcgcaat
cccacatccactctggtcctggtcacctccagctcgtccttgacaccagccaccgcgggc
cacgcctccctctccagctcctccatccccggctcgatgtccacctcggtgggctcggtc
ctgtcctcctctggatccggcggcagggagagggagaggaaacctgagggtcaccaggaa
ggatctggggggtcgctaccacaaccggtagcctgtcatcccacaccgaccgccctgcta
ccgctcatactgccagccgagtctcctcaccctgctccccgcaagcagatcatcatggga
cgcccggggactgtttggaccaacgtggagcctcggtcggtgccagtgttcccttggcat
tctctcgtccctttcctggagccgagccaaccaggagcggctgcccagcctgctgatggc
cagcagcttgtcaatcagggcaaagagcctcgttgtggggttgccttggtgagcgacggc
gggcgaaccaccggccctccagacttagagagaggatccccgtcatgccctcctcctccg
accaatgacaatcctcctgcagaaaggggcggggctgacagcgaaaccgagagcgacaca
gacgacccgttctcgccgggtgtggccaatgatccggcgccctccactggcaccatgaag
agacgcacgcagtccctcagcgctctgcccaaggacggagacaggaagagggagaaagat
cacatccgccgtcccatgaacgctttcatgatcttcagcaaacgccaccgagccctcgtg
caccagcgacatcccaaccaggacaaccggacagtcagcaagatcctcggggagtggtgg
tacgctctgggtcccaacgagaagcagcagtaccacgatctagccttccaggtgaaggag
gcccacttcagagcccaccctgattggaaatggtgtaacaaggaccgcaggaagtcactg
tcagagggccgcgggaccccaaaagagtcacgggagaggagcatgtcagagagtatagat
cctcacacagagtcccaggtgctagaggggaaggtagggagctcaggctggccgatggga
tcggagcgtcgaggggggccgttcggcgggcagcacccccgtccccgagccttttcccag
agcgccgtgcacaccctggagcagagggagagagagagagacctggagaaggaggaaggg
gcgagtttgtttcgtaaccggccgccgccccagatgtaccagggcggcgccagcgaggat
gtgaccagcgacgaagagcgcatggtcatctgtgaggaagagggagacgatgatgtcatg
gaggattcatgtcccgagggctccatcgacctcaagtgtaaagagcgagtgacggacagt
gatgaagatgagccagatggacagcatggcttccagccagtggctcgctcctctctcccc
tcctcctctcctccatccccacactccgactccacctcagctacagggaactcaggagga
agtggtgaagaagagaagagaggcgcggatgcaggagaggaagggaacgagggaggatcc
atcagagaagaagcagcagcgactggaggagaagcagggagtggaggtgggcagggtttc
tcctctctatccatcgcaggctcagcgtccagcacccaggctccgctcgcttatacccag
cagggtggcacccagctcctcggcgccgtccgcatggctcccactatggtgaccaacgcg
gtacgacccatcgccagcacgcccatcccgatcgccagcaaacctgcggaaggcgccgtc
accctcagctccctgcctcaggacaagaaagccgctctcctgattggaagcagcggacct
cagcagctgccaatcaacgcagggggtgggtacccgtcctcatcatcatcatcctcctcc
tcctcctccctggtccagtcagttgtaacccctatagggagcagcggcctcgtcactagc
ctagttttgggcggggggtcctccttcccagccgcccaaccagtgcagcttctcactacg
cagcccctgccgcagcacgcacaaaccccccttcctgtaatccaanctcagctccgcccc
accgccacctcttctctcacacctcccaagccgctagcgcaggtccagtacatcctgccc
accgacagcccctcgtcccctctgctcacccagcagcaaatcctctccctgcccaccaat
gctgccctggccaatgtcagccccgggactagagtccaaacccagtcgccggtcttgcag
agcaagatgttggttcccatggcaacagtgagaacagggtctactcctcctcatccttcc
atttccctggtggctccgcctcttcctgtgcagaacggccccgcgacaggaaacaagatc
atccagatcgctcccatgcctgtggtccagaccaacgttcacnctggcagcgccgcagca
ttgcaccctgggagcccctttcctgtttccatggcaaccgtgatggctcccggtgctgcg
cccccacagaccgttcttctgacctctccacccaccaggatcacctatgtccaatccagt
ccaggtgttaccacggcaatgccccaacaagccccgcccccttcaggtcccgcgtatctc
ccatcatcgctggcgaccctgggcttcaccgccatcgccccggccggacaaaccctggtt
cagcccatcgttggacaacctccactgctagctccagccccgcccctgagctgtcaatct
cagacccctacaggccaggcctcggcaaccgctggtcgtcaggtacttactgccatttat
cctgcaccaaccgttcctctggcgacaggcgtggtctccatgacaacagtaccgccctct
gtggcggctccagcccaggatgtgttaaacccttcgtctccattggcgacgggggcgcag
ggctcagcagcggcgacccctcagcccagtgcggcggcagcagcggcggcggtgttagag
ccaaagttagaggtgaagatcgagcgtgatctggacgctctgaccgaggaggaagggatg
tccagctgtgctcttaactcatccagctgcatgagtaacgcaacagcagcgaaaatagaa
gaggacatcgttcatcacatcaaggaggaaaatatgagagacggatactgcagagagaga
cgaagcgacatggacggagagcgcgagagagcgatgaaggagaacagcgacaagaagagc
agcagagagatggacagagaggaccacagcatgggcgacagcagcaaagaggctggacct
cgttcccctcctcctccaccaccctcaggtttggacccccctccccctcctcctgcagaa
agagagcccgcctcctcctcctcaaagaagatcaagttccgacccccgccgctcaaaaag
acacctgactcggttttgtctgagatgtacttcgaagagcgttttgctgagcttccagag
tttaacccagaggaggtcctgccctcgcccactctgcagagtctggccacatcacccaga
gccatcctgggaagctaccgcaagaagaggcgcaactccaccgagctggaactgacagcg
gaagaccccagctctccgaggaggaagacccgccgcctctccagctgcagctcggagccc
aacaccccgaagagcgccgccaagtgcgagggagaaatcttcacctttgacagaccaggc
acagagggagaggatcttctcggagacttggaccgggtcccgtactcgtctctgcggaga
actctggatcagcggcgggccttggttatgcagctgtttcaggaacatggcttcttcccc
tcagctcaggccaccgccgccttccaggctcgttactcggacaccttccccaccaaggtg
tgtctgcagctgaagatccgtgaagtccgtcagaagatcatgcagacagccacgcccgga
gcccccgagcccggagggtcgatcgaggccaaccccgccccgtcccacagctcctctttc
aatcaatcagcccgggaggacggaggggcggagcagcagcagcagcagcagcagggagac
agaggccggagccccgaggagcccaacagcgaaggctcatag
DBGET
integrated database retrieval system
