KEGG   Scomber japonicus (chub mackerel): 128374170
Entry
128374170         CDS       T09718                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03082  ATP-dependent chromatin remodeling
sjo03083  Polycomb repressive complex
sjo04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    128374170 (rbbp4)
   03083 Polycomb repressive complex
    128374170 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    128374170 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sjo03036]
    128374170 (rbbp4)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     128374170 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     128374170 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     128374170 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     128374170 (rbbp4)
    PRC2.2
     128374170 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     128374170 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    128374170 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    128374170 (rbbp4)
   NuRF complex
    128374170 (rbbp4)
   NuRF complex (fruit fly)
    128374170 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_RIG_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st MIOS_WD40 eIF2A Beta-prop_IFT140_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 128374170
NCBI-ProteinID: XP_053190413
LinkDB
Position
15:22263145..22268977
AA seq 425 aa
MADKEVGAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGK
DYSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQLDASHYDSEKGEFGGFGSVTGKIEIEI
KINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECHPDLRLRGHQKE
GYGLSWNPNQSGSLLSASDDHTICLWDISAVPKEGKIVDAKTIFTGHTAVVEDVSWHLLH
ESLFGSVADDQNLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVA
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDT
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSTD
PEATV
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcagataaagaagttggtgcatttgatgatgcggtggaggagagggtgataaatgag
gagtacaagatctggaagaaaaacactccttttctctatgatttggttatgacccacgcc
ttggagtggcccagcctcactgctcagtggctgcctgatgtatccaggccagagggaaag
gattacagtgtgcatcggctggttttgggcactcacacgtctgatgagcaaaatcacctg
gtcattgcaagcgtccagctgcccaatgatgatgcccagcttgatgcctcacattatgac
agcgaaaaaggagagtttggaggctttgggtctgtgacgggaaagattgagatagaaatc
aagattaaccatgaaggagaggtgaaccgtgcccgatacatgcctcagaacccctgcatc
attgccaccaagacccccacctcagacgtgctggtgtttgattacactaagcacccctcc
aagccagatccatctggagagtgtcaccctgatctgcgtctcagaggccatcagaaagaa
ggttacggtctctcctggaatccaaatcagtctggttccctgctcagtgcttcagatgac
cacacgatctgcctgtgggacatcagtgctgttccaaaggaggggaagatagtggatgcg
aagacaatcttcactggtcacactgctgtggtggaggacgtctcctggcacttgctccat
gagtcactctttggatctgtagcagatgaccaaaatctcatgatttgggacactcgttca
aacaacacctccaaacccagccacgcagtagatgcccacacagccgaggtcaactgtctg
tcatttaatccttacagcgagttcatccttgccaccggctcagcagacaagactgtggct
ctttgggacttgaggaacttgaaattgaagttgcattccttcgagtcacacaaggatgag
atcttccaggttcagtggtcccctcataatgagaccatactggcatccagtggaacagac
cgtcgcctcaatgtttgggacctcagcaaaattggagaagagcagtctccagaagatact
gaggatggccctcctgagcttctgttcatccatggaggccacacagccaagatctctgat
ttctcctggaaccccaacgaaccctgggtcatctgctcagtgtctgaagacaacatcatg
caagtctggcaaatggctgagaacatctacaatgatgaagatcctgagggttcgacagac
cctgaagccacagtgtaa

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