Scomber japonicus (chub mackerel): 128374211
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Entry
128374211 CDS
T09718
Symbol
irx1b
Name
(RefSeq) iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128374211 (irx1b)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
128374211 (irx1b)
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
128374211
NCBI-ProteinID:
XP_053190459
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Position
15:23186044..23189451
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AA seq
459 aa
AA seq
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MAFPQLGYPQFLSASHEVYGGERPASAREGATEGGVSSSATAAAVGSMLGMYGSPWAAHN
YSAFLPYSGATDLALISQMGSQYDLKDSPGSHAASLPVHAAQGFYPYGQYPYGDPSRAKT
ATRETTSTLKAWLQEHQKNPYPTKGEKIMLAIITRMTLTQVSTWFANARRRLKKENKVTW
GRSAEDRDGRIFSSDNEDEHGKNGSDDEDDEEEIDLETVDIERPEEQRAGEQDTEKGEGE
AGLAAREASEPKSSESSRTLSVEGLRRVEAAISLNKSPVVKLAVDHSPSRQECQRPPQSK
PKIWSLAETATAPDSSHKPSPVAHAHHPALASAGHPALLPGHGIYTCQIGKLHNWANAAF
LNANSLLNMRSLLGGAPAGHLPLQGAVPAARHDARPTVTGPGTSGTEDDSDVESSGSFSP
KRDDEESDHRPDSLKSPFQLITDRPHHGTAAQRVLTTTL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctttccctcagctggggtacccccagttcctcagtgcctcccatgaggtgtacggg
ggcgagcggccggcctctgcccgagaaggagctaccgaaggcggcgtgagctcgtccgct
accgccgctgctgtcggctccatgctggggatgtacgggagcccatgggcggctcataac
tacagtgcctttctgccgtacagcggagccacagacctcgccctcatatcccagatgggc
tcacagtatgatctgaaggacagcccaggctcccatgcagcctctctgcctgtccacgcc
gctcaaggcttctacccgtacggccagtatccgtacggagacccgtcgagggccaagacg
gccaccagggagaccaccagcaccctgaaggcctggctgcaggagcaccagaagaacccc
taccccaccaaaggagagaagatcatgcttgccatcattacgaggatgacactcacacag
gtgtcgacatggtttgcgaacgcccgcaggcggctgaagaaggagaacaaggtaacctgg
ggccgcagcgccgaggacagggacgggcgcatctttagcagcgacaacgaggacgagcac
ggcaagaacggcagcgacgacgaagacgacgaggaggagattgatttggaaactgtcgat
atcgagagacccgaggagcagcgagcaggggagcaggacacagaaaagggggagggagag
gcaggcctggccgccagagaggcctcggagccgaagagctcggagagcagcaggacgctt
tctgtggagggcctgagaagagtcgaggcggctatttctctcaataagtcgcccgttgtc
aaactcgcagtggatcattctccaagcagacaggaatgccagagaccaccccagagcaaa
cccaaaatctggtcactggctgagaccgccacggcccccgacagctctcacaaaccttcc
cccgtggcccatgcgcaccatccggctttggcctccgccggccacccggccttactcccg
ggtcatgggatatatacatgccagattggcaagctgcacaactgggccaacgcggctttt
ctgaatgccaactctcttttgaacatgaggtcgctcctcggaggggcgccggccggacac
ctgcctctccaaggcgcagtgccggctgcgcgtcatgacgcacgaccaacggtgacgggc
cctggaacttcggggacggaagacgacagtgatgtagagtcgtcaggaagcttcagtcca
aaaagagatgacgaagagagcgaccacaggcctgactcccttaagtccccattccagctg
atcactgacagacctcaccatggcacagcagcacagcgagttctgacaacaacattatga
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