Scomber japonicus (chub mackerel): 128374241
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Entry
128374241 CDS
T09718
Name
(RefSeq) RNA exonuclease 5-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128374241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128374241
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-60S particles
RNases
128374241
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RNase_T
Motif
Other DBs
NCBI-GeneID:
128374241
NCBI-ProteinID:
XP_053190496
LinkDB
All DBs
Position
2:11674784..11683468
Genome browser
AA seq
813 aa
AA seq
DB search
MEPSTSTACDSKKRKNNAPAAHETAKRLKTGQEDDEAVECGRTSCSPRISVLPESLQQAI
TQNELMELLHYAALGKTGGIKHPSWCRLHRQRKLQGVNVVLVEGLTQRHFYKHYLTLRHL
RSNYTTRVTFTPSPDNLASEIFRSELPDFDCSSVSKTEKEANSIHKALKVHPVIARFGTK
RRGLTAYVLTQEEMIKKHYPVKGMPGFEEFICTDSVDNVTDSSPLYGLDCEMCLTEKGYE
LTRVSLVDSDGNCVLDDLVKPENRILNYLTQFSGITAAMLRPITTTLRDVQTKIRTLLPQ
DAVLVGHSINNDLLSLKLIHKNVIDTSLLYRREFGQKFKLKVLAETVLKREIQTDDKKGH
NPIEDALAALELAQYFIKTGPCQVVELHLEELWGYTIEEKSADCEPAPTPAPAPAPAPIN
RFADILQTLGRSVAFLGKRSDVALHLSNQQWHSSDKEVVAAFRRNTKCPFFSVLQLSSFS
NQLKSFFPHQKVCANLRDMCVVFAGPLPADFSERDVRRLFRCCGAVRKIKMLNAAVRVHA
EVEFEQLEGALLALKTLNGLNVQGQSMKVQRPVHESMLDLDLTLDALSVDVLNSSHLYTV
KLKPSMADSIHLSAKVNGHAKCLDVTPFQTAKKSPPATLNGHYTETESKKFSNSKSELSE
ETLRGTFDRFGAVEGIILPAKPGKHPRHAHIKFGSLEGKHAALSSSEDLWKEHYLICPSL
TPPHLSSWVAMTTSMNSEEADEEAVEDEERTHTHTSSQIQEMELMMMKKLDRRLGKLFRS
LPDFTLSVVIFLGHTSAHGHLPGLCLLEVKQEP
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggagccttcaacatcaacagcatgcgatagtaagaagagaaaaaacaacgcccccgca
gcacatgagacggccaagagattaaaaaccgggcaggaggatgatgaggcagtggagtgt
ggacgtacctcctgctcaccgaggatctctgtgttgcctgaaagcctccaacaagcaatt
acgcagaatgagctgatggagctgctgcattatgccgctctggggaaaacaggtggcatc
aaacatcccagttggtgtcgtctccaccgccagaggaagctccaaggtgtgaatgttgtg
ctggtggagggtctcacccaaagacacttttataaacactacctcaccctgcgacacctc
aggagcaactacaccactagggtcaccttcactccatcacctgacaatcttgcgtcggaa
atcttcaggagtgaacttcctgactttgactgttcatctgtttccaaaacagaaaaggaa
gcgaacagcatacataaagcattgaaggttcatccagtaatcgccaggtttgggacgaag
aggagaggactgacagcgtatgttctcacccaagaggagatgatcaagaagcactaccct
gttaaaggaatgccgggctttgaggagtttatttgtacagatagtgttgataatgtcact
gacagtagccctttgtatggacttgactgtgaaatgtgtctaacagaaaagggatatgag
ctgacccgggtttctctggtggatagcgatgggaactgtgttttggacgatctggtgaaa
ccggagaaccgaatcctcaactacctcacacagttctctggcatcaccgcagcgatgttg
aggccaatcacaaccaccctacgagatgtccaaaccaagattaggacgttgttaccacag
gatgcggtcctggtgggccactccatcaacaacgacctcctgtctctgaaactgatccat
aagaatgtaattgacacttcgttgctgtacaggagagaatttgggcagaagtttaaactc
aaggtcctggccgagacagtgctgaagagggaaatacaaactgatgacaagaagggtcat
aacccgatagaggatgctctggcagcgctggagctggctcagtactttattaaaacagga
ccttgtcaggttgtagagctacatctggaggagctgtggggatacacaatagaagagaag
tccgctgactgtgaacctgctcccacacctgcacctgcacccgcacccgcacctattaac
aggtttgctgacatattgcagacactcggccgctctgtcgcctttttaggaaaacgctct
gacgtcgccctccatctgtccaatcagcagtggcacagctctgacaaagaggtagtggcc
gctttcaggagaaacaccaagtgtccgttcttctctgtgctgcagttgtcgtctttttca
aaccagctcaagagtttcttccctcatcagaaggtgtgtgcaaaccttcgagatatgtgt
gtagtgttcgccgggccgctccctgctgacttctctgagagagatgtgaggcggctgttt
cgttgctgtggagcggtccggaaaatcaaaatgctgaacgcagctgtcagggtccatgcg
gaagtggagttcgagcagctggagggagctctgctggctttaaaaactttgaatggactt
aatgtgcagggacagtccatgaaggtgcagaggcctgttcatgagtcgatgctggacctg
gatctgactcttgatgctttgagtgttgatgttctgaactccagtcacctctacactgtt
aaattaaaacccagtatggccgacagcatacacctttctgctaaagttaacgggcacgct
aaatgtttagatgtcactccttttcaaacagcgaagaagtcacctcccgctacattaaac
ggtcactatactgagactgagtcaaagaagttttctaactcaaagtctgaactgtctgag
gagacactcagaggaacatttgaccgcttcggtgcagtagagggaatcatcctgcctgcc
aaacctgggaaacacccaagacatgcacacataaagtttggtagtttggaggggaaacac
gcggctctcagctcctctgaggatctttggaaggagcactacctcatctgtccatccctg
actccacctcatttgtcttcatgggttgccatgacaacttcaatgaattcagaagaagct
gatgaggaagcagtagaagatgaggagaggactcacacgcacaccagctctcagatccag
gagatggagctgatgatgatgaagaagttggaccggcgcctggggaagctcttcagatct
ctcccagacttcactttatctgtggttattttcctcggacatacaagcgctcatggacac
cttcctggtttatgtcttctggaggtcaagcaggaaccttga
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