Scomber japonicus (chub mackerel): 128374307
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Entry
128374307 CDS
T09718
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03015
mRNA surveillance pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128374307 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
128374307 (ddx39b)
03015 mRNA surveillance pathway
128374307 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128374307 (ddx39b)
03041 Spliceosome [BR:
sjo03041
]
128374307 (ddx39b)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128374307 (ddx39b)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128374307 (ddx39b)
Spliceosome [BR:
sjo03041
]
Complex C
Other components
EJC/TREX
128374307 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128374307 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
128374307
NCBI-ProteinID:
XP_053190567
LinkDB
All DBs
Position
15:complement(29781099..29795990)
Genome browser
AA seq
432 aa
AA seq
DB search
MTENDVDNELLDYEDDEVEAAGVGDVGGTGDMSMRKEGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKDSPHIVVGTPGRI
LALTRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNIGELPE
EIDISSYIEPAR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaatgacgtagacaacgagctgttggactatgaggatgacgaggtggaggct
gcgggggtcggggatgtcgggggtacaggtgacatgtccatgaggaaggagggagtgaag
ggctcctatgtgtccattcactcttctggattcagagacttcctgctgaaaccagagctg
ctcagagccatagtggactgtgggtttgagcatccatctgaggttcagcatgaatgcatc
cctcaggctatcctgggtatggatgtgctctgtcaggcaaagtctggcatgggaaagact
gcagtgtttgttctggctactctgcagcagctggagccagtcacaggacaggtgtcggtg
ttggtcatgtgtcataccagagagttggcctttcagatcagcaaggagtatgagagattc
tcaaagtacatgcccactgtcaaggtggcagtgttttttggagggctgtccataaagaaa
gatgaagaggtgctgaagaaggactctcctcacattgtggttggaacaccaggccggatc
ctggcactgacacgcaacaagactctcaacctgcgtcacattaaacatttcatcctggat
gagtgtgacaaaatgctggagcagctcgacatgcgcagagacgtgcaggagatcttccgt
atgactcctcatgagaagcaggtgatgatgttcagcgccaccctgagcaaagagatccgt
ccagtctgcagaaagttcatgcaagatccgatggaaatctttgtcgatgatgaaaccaag
ctgacccttcatggtctgcagcagtactacgtcaagctgaaggacaatgagaaaaacaga
aagctctttgatcttctggacgctctggagttcaaccaggtggtgatctttgtgaagtcg
gtgcagcggtgtgtagctctggctcagctgctggtggagcagaacttccctgccatcgct
atccacagagggatgcctcaggaggaacgtttgtctcgctaccagcagttcaaagacttc
cagaggagaatcctggtggctactaacctgtttggacgggggatggacatcgaaagagtc
aacattgcctttaattatgacatgccagaagactctgacacttacctacacagggtggcc
cgagcaggcaggtttggcacaaagggcctggctatcacctttgtgtctgatgaaggtgac
gctcgcacgctcaacgatgttcaggaccgcttcgaggtgaacattggcgagctgccagaa
gagatcgacatttcctcttacattgaaccagcacgatag
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