Scomber japonicus (chub mackerel): 128374354
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Entry
128374354 CDS
T09718
Symbol
vps52
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128374354 (vps52)
Membrane trafficking [BR:
sjo04131
]
Protein recycling
Others
EARP complex
128374354 (vps52)
Endosome - Golgi transport
Tethering complex
GARP complex
128374354 (vps52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF3440
MscS_porin
Motif
Other DBs
NCBI-GeneID:
128374354
NCBI-ProteinID:
XP_053190620
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All DBs
Position
15:2511434..2527041
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AA seq
724 aa
AA seq
DB search
MAELAAAVVEAGSDVNTAGNPTEVAMAYLQDETTDGEIPNLNLGELDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRQYSKQVETELQKIEQASIKDYIKESQNIALLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNVRLKNRQAVRSHLSQLVDELVVPG
AMISTILDSPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKLKAVSKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTVGQRGAILSPAEL
EGPILVPHTAQRGDSRYPYETLFRSQHYALLDNGCREFLFLSDFFMVTGNSAFDLFNSIM
GKTLSMFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITAKRSIPALDKYWEAVLELFWPR
FELILELNIQSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFPNERTNNLLGQL
QIEVENFVLKMAAEFPSRRDQLIFLINNYDMLLSVLTERAADDSKEVEGFQQLLLARTQE
FIEEILSPPFGGMIAFVKEAEALLEKGQLDRLKNEEARITQLIRGFSSSWKQSVESMSQD
VMRSFTNFKNGTSIIQGALTQLIQYYHGFHKILNQPSFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctagcagcagctgtggttgaagctggcagcgatgtaaacacagctgggaac
ccaacagaagtagctatggcgtatttacaggatgagacgactgacggagaaatcccaaac
ctgaacctgggagagctggacctcactactgatgagttcatcctggatgaagtggacatt
cacattcaggcaaacctggaggatgatctggtgaaggaggctctgaaaacgggcgttgat
ctccgtcagtactccaaacaggtggagacggagctgcagaagatcgaacaggcctccatc
aaagactacatcaaagagagtcagaacatcgctctgctgcacaatcagatcaccgcctgt
gactctatactggagcgtatggagggaatgctgagcggcttccagagcgatctctcctcc
atcagcagtgagattcagactctgcagcagcagtctgtcagcatgaacgtccgtctgaag
aacaggcaagcggtccgcagccacctgagccagctggtggacgagctggtggtgcctgga
gccatgatctccaccatcctggacagtccggtgacggagcaggaattcctcgagcagctc
cacgaactcaacaacaagatcaacttcgccaaagagctgagcttcagagagacgctggcc
tgctccgacatccaggacatcgtggaccgactcaaactcaaggcggtgtcaaagatccga
gagttcatccttcagaagatttactcgttcaggaagccgatgacaaactatcagatccca
caaaacacgctgctgaaatacaggtttttctatcagtttcttttagccaacgagagaacg
gtggcgaaggagatcagagacgagtacgttgatacgatgagtaaaatctactacagttac
ttcaagtcgtacagcggccggctgctcaaagttcagtacgaggaagtggctgataaagac
gatctgatgggagtagaagacacagcaaagaaaggtttcttctccaaaccgtctctgaag
agcaggaacaccatcttcactgtcggccagcggggggcgatactgagtcctgctgagctg
gagggtccgatcctcgttcctcacacggctcagaggggagacagcaggtatccgtatgag
acgctgttccgcagtcagcactacgctctgctggataacggctgcagagagttcctcttc
ctgtccgacttcttcatggtgacgggaaactctgccttcgacctcttcaacagcatcatg
ggaaaaactctcagcatgttcctgaagagcatgtccacctacgtgtcggactgctacgac
agcatcgccgtgttcctgtgtattcacatcatcctccgattcagagccatcacagccaag
aggagcatccctgccctggacaagtactgggaagccgtcttagagctgttctggccgagg
ttcgagttgattctggagctgaacatccaaagcatcagaaacacagaccctcagaaactg
ggagtactggacaccagacctcactacatcacccgtcgctacgctgagttctcgtcggcc
atcgtcagcatcaaccaaacgtttcctaacgagagaaccaacaatctgctgggacagctg
cagatcgaagtggaaaactttgttctgaagatggcggcagagtttccctccaggagagat
cagctgatcttcctcatcaacaactacgacatgttgctcagcgtcctcacggagagggca
gcagacgacagtaaagaggtggaaggtttccaacagctgctgctggccaggacgcaggag
ttcatcgaggagattctgtctcctccgttcggagggatgatcgccttcgtgaaggaggcc
gaggctctgctggagaaagggcagctcgaccgactgaagaacgaagaagctcggatcacg
cagctcattcgagggttttccagctcgtggaaacagtcggtggagtcgatgagtcaggac
gtcatgagatctttcaccaactttaagaacgggacgagcatcatccagggcgctctgacg
cagctcatccagtactatcacggcttccacaagatcctgaaccagccgagcttccgcagc
ctggccgtccgctccgagctcatcaacctgcaccacctcatggtcgaggtgaagaaacac
aaacccaacttctaa
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