Scomber japonicus (chub mackerel): 128374425
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Entry
128374425 CDS
T09718
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03320
PPAR signaling pathway
sjo04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
128374425 (rxrba)
03320 PPAR signaling pathway
128374425 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128374425 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sjo03310
]
128374425 (rxrba)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
128374425 (rxrba)
Nuclear receptors [BR:
sjo03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
128374425 (rxrba)
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
128374425
NCBI-ProteinID:
XP_053190664
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Position
15:6517741..6543891
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AA seq
470 aa
AA seq
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MGDSRDSRSPDSSSVSSPPSGQRSPPLVPSAAASMTSLPPITSAGVNSPISSIGSPFSVI
SSSLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPLGLKQLSAHSPGPM
LSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMVDKRQRNRCQ
YCRYQKCLAMGMKREVAKMNDRSVQEERQRNKEREGEVESTSVVNEEMPVDKILEAEMAV
EQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAG
WNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTE
LVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKQKYPDQQ
GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtagagattcccgcagcccagacagttcgtctgtgtcctcccccccgtct
ggccagcgctcacccccactggttccctcagctgcagcttccatgacctcccttcctccc
atcacctccgccggagtcaacagccccatcagtagcattggttcccctttctccgtcatc
agctcttcgctaggctcaccctgcctacccggcacaccgtcagtaggctacggccccatt
agcagtccgcagatcaactcaacagtgtccatgtcaggactccatgcagtgagcagttca
gatgatgtgaaacctcctttgggcttgaagcagctgtcagcccacagcccaggcccgatg
ctttcccagaaacgcctttgttcaatctgcggagacagatcttctggtaagcactatggt
gtctacagctgcgagggttgtaaaggtttcttcaaacggacagtgagaaaagacctgacc
tacacctgtcgggacaataaagactgtatggtggataagagacagaggaaccgctgccag
tactgccgctaccagaagtgcctggccatgggcatgaagagagaagtggccaagatgaac
gacagatctgttcaagaggagcggcagaggaacaaggagcgggagggtgaagtggagtcg
accagcgtggtgaatgaggagatgccggtggataagattttggaggctgagatggccgta
gagcagaagacagagctgcacgcagatggaagttcaggaggaagctctcccaacgatccc
gtcacaaacatctgtcaggcagcagataagcagctcttcaccctggtggagtgggccaag
aggatccctcacttctctgagctgccgctggatgaccaagtcatcttgctacgtgcaggt
tggaatgaactcctgattgcgtcgttctcccatcgctccatctcggtgaaggacgggatc
ttactggcgaccggccttcacgtccacaggaacagtgctcacagtgcgggtgttggagcc
atctttgacagggcgcacaatgccgaggttggggccatatttgacagggttttgacagag
cttgtgagtaagatgagagacatgcaaatggataagacagaactgggctgcctgcgagcc
attatcctcttcaacccagatgccaagggtttgtccaactccagtgaggtggagctcctg
agagaaagagtgtacgcatctctcgagacttactgcaaacagaaataccccgaccagcag
ggcaggtttgcaaagctcctcctccggctcccagcactgcgctccatcggtctaaagtgc
ctggagcacctgttcttctttaaactgatcggtgacacgcccatcgacaccttcctgatg
gagatgctggaggcacctcaccagctcacctag
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