Scomber japonicus (chub mackerel): 128374515
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Entry
128374515 CDS
T09718
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128374515
Pattern recognition receptors [BR:
sjo04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
128374515
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_9
LRR_5
LRR_NXF1-5
LRR_6
LRRNT
IFT52_central
Motif
Other DBs
NCBI-GeneID:
128374515
NCBI-ProteinID:
XP_053190759
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All DBs
Position
15:796109..801079
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AA seq
1037 aa
AA seq
DB search
MNFLLALQHGESSYMNFLLALQHGEKRSRPADETVSRNLSALGVRVRTRGSGQDSGQDSG
FGSGLGVRVSPRGSGQDSGQDSGFGSGLGVGVRTRGSGQDSGFGSGLGVRVRTRGWGQDS
GFGSGLGVRVRTRGSGQDSGFGSGLGVRIIMPRSCFLFLLLLRFNPSLTYSLKNCTVEYS
ADVSHVSVLCMDRELTAVPDDIPKTAQSLILSTNQILSINQTDLRGLSKLVFFLMQLNSL
SHVADGAFADLVELTELDLSCNDLTDLTDDMFQGLTKLLSLSLNRNQIAYISPLAFQPLI
NLQKVDLADNELRVITYIVPILQLSSLNELHIGTNRFTTFESDDLHLNISNLRRLEFNLN
PLEKFSITKDVFPHLEYVDLSKCSVGFEWNVPDKTFLRSLTSLLLSGTEISFETYSSMLR
SAESVEYLWLSYTTEWFDKGLIDVACQIPALTNLDLTCNDIHILNDTLLQPCSKITQLAL
VGNVMTHLSEDSLRPLTQLVELRLHQNFLPEVPFAVRGLSSLAVLTLSYNDIGELGCSDF
LNLTSLMQIFLNNNRISRLRGCVFQELKNLRLLYIEDNPIYSLDDTFKVSLKSLRILNMH
SNDLKGLSKGVFENLSFLLNLDLKSRSICHEENGTFEGLDHLQTLVLTAYSLTTDMFRGL
PHLENLTITLPIFLNSLSHQLPKEPPFLNVPSLRELAIQNMNKYNMVITPDLLRGLNSLE
NFAAVNFFAGPPHPDTFTYTPHLISLQITDSNVSYPEPEMVRPIPNLQSLDLSKNKLRSL
DFLAQADLPVLSWLKLSENELTVINETVFQSLPALTYLDLLGNPFTCSCSNVGFIQWMIS
NNQTQVVNAYQYTCSFPPSKQGSKLLDFDIQSCWMDVNFLCFISSTCLVVLTLLTSFIYH
FLRWQLTYGFYLFLAFLYDKRKRKQEAPHCYDAFISYNVHDEAWVYQEMLPVLEGEQGWR
LCLHHRDFQPDSFTSLFDDQQCLQVLMLSAVKCDRSHRHLQVQRDKLCPDSWLDDFKVLK
TLPIKTSEAPTPSTQIT
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcctgttagcgctgcagcatggagagagctcatacatgaacttcctgttagcg
ctgcagcatggagagaaaagaagcagaccggctgatgagacggtaagtagaaacctctca
gccctcggggttcgggtcaggactcggggttcgggtcaggactcgggtcaggactcgggg
ttcgggtcaggactcggggttcgggtcagccctcggggttcgggtcaggactcgggtcag
gactcggggttcgggtcaggactcggggttggggtcaggactcggggttcgggtcaggac
tcggggttcgggtcaggactcggggttcgggtcaggactcggggttggggtcaggactcg
gggttcgggtcaggactcggggttcgggtcaggactcggggttcgggtcaggactcgggg
ttcgggtcaggactcggggttcggatcatcatgcctcgttcctgtttcctcttcctgttg
ctgcttcgttttaacccttcgctgacgtactctctgaagaactgcaccgtcgagtactct
gcagacgtcagccatgtttcggttttgtgcatggaccgagaactcaccgccgttcccgac
gacatccccaaaaccgcccagtcgctcatcctcagcaccaatcagatcctgagtatcaac
cagacggacctgagaggcttgtccaagctcgttttcttcctgatgcagttaaactctctg
tcacacgttgccgacggtgcttttgcagacttggtggagttaacggagctcgatttaagt
tgtaatgacctcacagacctcacagacgacatgtttcagggactcaccaaattactgagt
ctgtctttaaaccgtaatcaaatcgcgtacatctctccgctggcctttcagccgctgata
aacctacagaaagtagacctggctgataacgagctgcgtgtgatcacttacattgtgcct
attttgcagctgtcaagcttaaatgaattacacattgggacaaacaggttcactaccttc
gagtctgatgatctgcatttaaacatctccaacctgaggagactggagtttaatttgaat
ccactggaaaagttcagcatcacaaaagacgtctttcctcatctagagtacgtcgatttg
tccaaatgcagcgtcggctttgagtggaacgtacccgacaagacgtttctgaggagcttg
actagtttgttattaagtggaactgaaataagttttgagacgtacagctcgatgcttcgg
agcgctgagtcggtggagtatctgtggctcagctacaccactgaatggtttgataaaggt
ttgatagacgtcgcctgccagattcctgccttaactaatcttgatttgacttgtaatgac
attcacattttaaacgacacactgcttcagccttgctccaaaatcacccagctagcttta
gtcggtaacgtcatgacccacctttcggaggactcactcagacctttgactcagctcgtg
gaactacgtttacaccagaactttctaccagaagtgccgtttgccgtcagaggtctctcc
tcccttgcagtcttaactctgagttataatgatatcggagagctcggctgctccgacttc
ctgaacttaacgagtttgatgcagatcttcctcaataacaatcgcatctcaagactcaga
ggatgtgtttttcaagagttgaagaatttaagattactctacattgaagacaatccaatt
tacagtttggatgatactttcaaagtcagtctgaagagcttacgtattttaaatatgcac
agtaatgatttgaagggactcagtaaaggcgtctttgagaacctgtctttcctcctgaat
ttggacttaaagtcccggtcaatttgtcacgaggaaaacgggacttttgaaggactcgat
catctccaaacgcttgtccttacagcttactctctcacaacagacatgttcagaggactg
ccacacttagagaacctgacaataaccctccccatttttctcaacagcttgagtcatcaa
ttacctaaggagccccctttcttaaatgtaccatctttgagagagcttgcaatccaaaac
atgaataaatataacatggttatcacaccagacctgctcaggggcctgaactctttagag
aactttgcagcagtgaatttcttcgcagggccaccgcatccagacacatttacctacact
cctcacctgataagtcttcagataactgacagtaacgtctcatatccagaacctgaaatg
gttcggccgatcccaaacctgcagtccctcgatctgtccaagaacaaactcagatctttg
gattttctggctcaggccgacctgccggttctcagctggttgaaactcagtgagaacgag
ttgacggtgatcaatgagacggtcttccagtctctgcctgcactaacatatctggacctg
cttggtaaccctttcacctgtagctgctctaatgtcggcttcatccaatggatgattagc
aacaaccagacacaagttgttaacgcctaccagtacacttgttcctttcctcccagtaaa
caaggaagcaagctgctggactttgacatccagtcctgctggatggacgttaacttcctc
tgcttcatttccagcacttgtctggttgtgctaactctcctcacatccttcatctaccac
tttctgaggtggcagctaacctacggcttctacctcttcctggccttcctctatgacaag
aggaagaggaagcaggaagctcctcactgctacgacgccttcatctcctacaacgttcat
gacgaggcctgggtttaccaagagatgcttccagtgctggaaggagagcagggctggaga
ctctgtctgcaccacagagacttccaaccagacagtttcacttccctatttgatgaccag
cagtgtttacaggttctgatgctcagtgcagtgaaatgtgaccgatctcacagacatctc
caggtgcagagagataagctgtgccctgattcatggctggatgattttaaagtgttaaaa
actctgcccataaagacctcggaggcacctactccttctacccaaatcacatga
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