KEGG   Scomber japonicus (chub mackerel): 128374651
Entry
128374651         CDS       T09718                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128374651 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sjo03041]
    128374651 (snrnp40)
Spliceosome [BR:sjo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    128374651 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    128374651 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 WDR54 Beta-prop_IFT140_2nd Beta-prop_Nup120_160 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 128374651
NCBI-ProteinID: XP_053190867
LinkDB
Position
15:17647364..17655631
AA seq 347 aa
MIEPKKRAADMAVIPAAVKRPRTELVAAAQSQQLVASGPPRTSSLQAPIMLMSGHDGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSTLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDVRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYSMHGHSDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGGSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacccaaaaagagggcggcggacatggcggtgattccagctgccgtgaagcgg
ccgcggacggagctggtggcggcggctcagtcccagcagctcgtggcctcgggaccccca
cggacctccagcctgcaggctcccatcatgctgatgtctggccatgatggtgaggtctac
tgctgcaagtttcaccccaacggagccactctggcctcatcaggatttgacaggctcata
ttgatgtggaatgtatatggagattgtgaaaattatgcaactctgaagggtcacagcgga
gcagtgatggagctgcactacaacacagacggcagtaccctgttctcagcaagcacagac
aagactgtaggtgtgtgggacagcgaaacaggtgagaggatcaagcgtctgaagggtcac
acctccttcgttaacacctgctacccggcccgccgagggccccaactggtctgcaccggc
agtgatgacgggacagtgaagctgtgggacgtccgcaagaaaggggcaatccacactttc
caaaatacctatcaggtgctggccgtcaccttcaacgacaccagtgatcagattctgtct
ggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagctgatctacagt
atgcatgggcacagtgactcagttactggactcagtctgagctctgagggatcttatctt
ctttccaactccatggacaacacagtgcgtatttgggatgttcgaccatttgcacccaag
gagagatgtgtgaagattttccaaggcaacgttcacaactttgaaaagaatttgctgagg
tgctcctggtctactgacggcagtaagatagctgcaggctcggctgacaggtttgtgtat
atttgggacacaacatcccgtaggatcctgtacaagctgccaggccacgccggttctgtt
aatgaagtggcctttcacccagaggagccaatagtgctgtctggcggcagtgataaacgg
ctctacatgggtgaaattcagtag

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