Scomber japonicus (chub mackerel): 128374688
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Entry
128374688 CDS
T09718
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128374688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128374688
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128374688
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128374688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Not3
Motif
Other DBs
NCBI-GeneID:
128374688
NCBI-ProteinID:
XP_053190919
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Position
15:complement(6030377..6046011)
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AA seq
776 aa
AA seq
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MLETILRMLDNDSVQVDSVRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDIPQTLVAT
SPPGHSHLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSPV
KNGNPSSSLSSSSSSSSSSSSSSSSSSSSSVSGLTSSSLVSMATIAVGGGGVGGSGGNNN
NSHLGSLGGLLSNTSAGSYSNATQQPPHPSTQQQQQAKIAVGSSSSSSSSSSVPIINPSS
SANSYPVSSTSSPPNVGTQGLFTSLSQPQPPSGPTPTSNSLGLSLGLSLGKGGMSSSMAT
SPMSSGLGLSLSTMAGLLAGSTPAPYAQAAASGAVGSSLLGSLGGVSAVSTNSGVGSIGS
GSITVGGPTSSSTGGLLGPAPGMTGIGSGMGSGIGSGMLGLNSGQSGVQVSSLVAPSPVG
GLAPGSGVGIIGSNGGSSGSAGSGVLGGNPSLSVRPPSRQKQNGSTTSPSLLCITGYSAV
VADSATDSALNSASQLQSSQPSSLTSSANQPKDTGPSLLGSMSLSSNSPSPASYSEAKSM
SGGSLLNGPLSYSQSSDSIKAQEPLSSLKSMAERAALSSGMEGDVPLHLTPDIFPSTTAP
SGPPSAPQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEESVWTHMPHPSDSERIRQY
LMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWR
FHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgctggagacgatactgaggatgctcgacaacgactcggtgcaggtcgactccgtcagg
aagatcaaggatgatgtggagtattatctcgactcgtcgcaggatccagactttgaggag
aatgagtttctatacgacgacctggatctggaagacatccctcagacgctggtcgctact
tccccaccgggacactcgcacttggaggacgagatcttccagaactccagcagcacaccc
acctccaccacctcgtcctctcccatccccccctcacccgccacttgcactacggagaac
tcagaggacgacaagaagaggggacgttcaacagacagtgaagttagtcagtcacctgtg
aagaacggcaacccttcctcctccttatcctcttcctcctcatcctcttcttcttcctcc
tcctcctcctcttcctcctcctcttcctccgtctcggggctgacctcttcctcgttggtc
tccatggcgaccatcgccgtcggtggcggcggcgtcggcggctccgggggcaacaacaac
aacagtcacctaggcagcttggggggtctcctctccaacacttccgccggcagctacagc
aacgccacccagcagccgccgcacccgtcaacgcagcagcagcagcaggccaaaatcgca
gtgggctcctcttcctcctcctcctcctcttcctcagttcccatcatcaaccccagcagc
tccgccaacagttaccccgtctcctccacctcctctccccccaacgtcggcacgcagggg
cttttcacctcgctctcccagccgcagcctccgtcagggccgactcccacttccaacagc
ctcggcctcagcttgggcctctccttggggaagggcggcatgtccagctccatggcaacc
agcccgatgtcgtcaggtctcgggctgtcgctgagcaccatggcggggctcctcgccggc
tccactccggcgccgtacgctcaggcggcagcgtcgggcgcggtgggctccagtctgctc
ggctctctgggaggagtcagcgccgtgtccaccaacagcggcgtcggctccatcggcagc
gggagcatcacggtcggcgggccgacatcctcatcgacggggggtctgctgggtccggcg
ccggggatgaccgggatcggctccgggatgggttccgggatcggctccgggatgctgggg
ctgaactccggtcagtcgggggtgcaggtgtcgtctctggtggcgccgagcccagtcgga
ggtttggcgccgggcagcggagtgggaatcatcgggagcaacggaggcagctcgggatcg
gcaggaagcggagtgctgggaggaaacccgtcgctgtctgtgcggccgccgagccggcag
aagcagaacggtagcactacttctccctctctgctctgcatcacaggttacagcgctgtg
gtagcggacagcgcgacagactccgccctcaacagtgccagccaattacaaagcagccaa
ccctcatctttgacctcgtctgccaatcagcctaaggacactggtcccagtttattgggc
tctatgagtttgtcgtccaactctccgtcgccggcttcctacagcgaagccaaatcgatg
agcggcggcagcctgctgaacgggccgctctcctactcgcagtcctccgacagcatcaag
gcccaggagcctctgagcagcctgaagtccatggccgagcgagcagcactcagctcaggg
atggagggagacgtgcccctgcacctcaccccagacatcttccccagtactacagccccg
tctgggcctccgtcagcgcctcagccctcgctgtcggaggtcagcatccccccgtcgttg
ggggtctgcccactggggccggttcccctgtccaaagaccagctctaccaacaggccatg
gaggagtcggtgtggacgcacatgccccacccgtccgactccgagaggatcaggcagtac
ctgatgaggaacccgtgccccaccctgcctttccaccaccaggtgccaccgccccactcc
gacactgtagagttttaccagaggctttccacagagacgctcttcttcatcttttactac
ctggagggcactaaggcccagtatctggcagccaaagccctgaagaaacagtcttggagg
tttcacacaaagtacatgatgtggtttcagagacacgaagaacccaaaaccatcacggac
gagtttgagcagggaacgtacatttacttcgactatgagaaatggggccagaggaagaaa
gaaggtttcacgttcgagtaccgatacctggaagaccgagacctccagtga
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