Scomber japonicus (chub mackerel): 128374844
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Entry
128374844 CDS
T09718
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128374844 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128374844 (parn)
Enzymes [BR:
sjo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128374844 (parn)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128374844 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
FMP23
Motif
Other DBs
NCBI-GeneID:
128374844
NCBI-ProteinID:
XP_053191043
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All DBs
Position
2:complement(11684252..11698137)
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AA seq
677 aa
AA seq
DB search
MEVTRKNFKDCLNSVYTAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQSESKYITKTFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQDEEAQLREQTEERRNQHANGVGTPSFISPSSKGPAHVPEEHKDF
INKVIEKVEALFTNAEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERFIQV
SKVDEEERKRREQQKQEREQEELNDAVGFSRVIHAISKSAKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKEAPFKSPRVE
SAEGFPSYNTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWMDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQDKEKVGQPAKSWGEDGWVKSHYT
SSTTSGFGYPRGLRKRSISPVQTDPRTGDALIVDGWSNYSYADSTGSKKMKTDDVVESKT
SEGWLKTTDSSDSAGLSPIPDDEDKSPEGTDPADNAEGTVTWQQATTGHGRKGQKNKKKK
PEEPESTTSLFEVPEVW
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgcaaaaattttaaagactgcttaaactctgtgtacaccgccatagaa
gaggctgacttcctcgcaatcgatggagaattttcaggtattagcgatggccctaatgtc
agtgccctcaccaatgggctggacacgccggaggagagatacaccaagctgaagaagcat
tcaatggacttcctgctgttccagtttggattatgtacgttcaagtacgaccagtcagag
tcaaagtacatcacaaagacttttaatttttacatattcccgaaaccattcaacaggacg
tcccccgacataaagttcatctgtcaaagttccagtattgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtcacggaatcccttacctgaaccaagatgaagaagcc
cagctgagggagcagacggaggagagaaggaaccaacatgccaacggtgtagggacccca
tccttcatctccccgtcctccaaaggacctgcacacgtacccgaggaacacaaagacttc
atcaacaaagtgatagagaaggttgaggccctcttcactaatgcagagaagactttggac
ttggagccatgcactgggtttcagaggaagctgatataccagacactaaactggaagttc
cccaaggggcttcatgtggaaaccgtggaaacagaaaagaaggagcgattcatccaggtc
agtaaagtggacgaggaggagaggaagaggagggaacagcagaaacaggagagagagcag
gaggaactaaatgatgcagtaggcttctccagggtcatccacgctatttctaaatccgct
aaacttgtggtcggccacaacatgctgttagacgtgatgcacaccatccaccagttctac
tgccctctgccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttcccaaga
cttctggatacgaagttgatggcgtccactcagccatttaaggagctgatcacaaacacc
tctctggcagagttggagaaacagttaaaggaggcgcccttcaagtcaccccgagtcgag
tctgcagaaggcttccccagttacaacacagcccaggaacagctccacgaggcgggatac
gacgcctacatcacaggcctctgtttcatctccatggccaactacctgggctcgttcttg
actccacccaaagcctacatctcagctcgctccaaactaattgagccgttcttcaacaag
cttttcctgatgagaataatagatattccctacctcaacatcacaggaccagatttgcaa
cctaaaagagaccatgtcctgtatgtcaccttcccaaaagagtggaagaccagtgacctc
taccagctctttagtgcctttgggaacatccaggtttcgtggatggacgacacgtcagcc
tttgtgtccctcagtcaaacagaccaggtgcagatagctatgaacaccagccgctatgca
gagagctacaggatccagacgtatgcagagtacatccagggtaagcagcaggacaaggag
aaggtcggccagccagccaaaagctggggagaggacggctgggtgaagtctcactacacc
tcctccaccacgtctggtttcggatatcccagaggtttgaggaaacgcagcatcagcccc
gttcagacggacccgaggaccggagatgctctgattgtagacggttggagtaactactcg
tacgcggatagcacaggcagcaagaagatgaaaaccgacgatgttgtcgagagcaagact
tcagaaggatggctgaagacaacagattcatcagattcagcagggttaagtccaatccct
gacgatgaggacaaaagtcctgagggcaccgatccagccgataatgctgaggggacggtc
acctggcaacaagccacgacaggccacgggaggaaaggtcaaaagaacaagaaaaagaag
cccgaagagcctgaatctacaacatcactgtttgaggtcccggaggtctggtag
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